Hb_008643_020

Information

Type -
Description -
Location Contig8643: 37553-41836
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39970g
description Cf-4/9 disease resistance-like family protein
nr
ID XP_006370130.1
description Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9N959
description Cf-4/9 disease resistance-like family protein OS=Populus trichocarpa GN=POPTR_0001s39970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_020 0.0 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
2 Hb_000172_230 0.1329112923 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
3 Hb_049915_010 0.1543695845 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
4 Hb_120117_010 0.1574608835 - - Disease resistance protein RFL1, putative [Ricinus communis]
5 Hb_002783_210 0.175206494 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
6 Hb_101370_010 0.1819453487 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_004297_080 0.1836553254 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000532_150 0.1840082024 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
9 Hb_036029_020 0.1851779878 - - PREDICTED: patellin-3-like [Jatropha curcas]
10 Hb_000732_240 0.1860814999 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_000139_050 0.1911328792 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
12 Hb_006550_010 0.2006872836 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
13 Hb_000010_220 0.202040705 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
14 Hb_000925_020 0.20228792 - - PREDICTED: protein YLS9 [Jatropha curcas]
15 Hb_007749_020 0.2043854767 - - receptor-kinase, putative [Ricinus communis]
16 Hb_029576_070 0.2044162199 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
17 Hb_001675_290 0.2061133551 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
18 Hb_017549_010 0.2088817935 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_055531_010 0.2108432829 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
20 Hb_000163_040 0.2119478755 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]

Gene co-expression network

sample Hb_008643_020 Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_008643_020--Hb_000172_230 Hb_049915_010 Hb_049915_010 Hb_008643_020--Hb_049915_010 Hb_120117_010 Hb_120117_010 Hb_008643_020--Hb_120117_010 Hb_002783_210 Hb_002783_210 Hb_008643_020--Hb_002783_210 Hb_101370_010 Hb_101370_010 Hb_008643_020--Hb_101370_010 Hb_004297_080 Hb_004297_080 Hb_008643_020--Hb_004297_080 Hb_036029_020 Hb_036029_020 Hb_000172_230--Hb_036029_020 Hb_001675_290 Hb_001675_290 Hb_000172_230--Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_000172_230--Hb_007749_020 Hb_076771_010 Hb_076771_010 Hb_000172_230--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_000172_230--Hb_001675_310 Hb_000733_090 Hb_000733_090 Hb_049915_010--Hb_000733_090 Hb_008406_030 Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_049915_010--Hb_004297_080 Hb_049915_010--Hb_000172_230 Hb_049915_010--Hb_002783_210 Hb_001277_420 Hb_001277_420 Hb_120117_010--Hb_001277_420 Hb_038718_010 Hb_038718_010 Hb_120117_010--Hb_038718_010 Hb_010642_010 Hb_010642_010 Hb_120117_010--Hb_010642_010 Hb_120117_010--Hb_004297_080 Hb_000128_090 Hb_000128_090 Hb_120117_010--Hb_000128_090 Hb_003529_010 Hb_003529_010 Hb_002783_210--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_002783_210--Hb_001675_260 Hb_000604_050 Hb_000604_050 Hb_002783_210--Hb_000604_050 Hb_008566_070 Hb_008566_070 Hb_002783_210--Hb_008566_070 Hb_017549_010 Hb_017549_010 Hb_002783_210--Hb_017549_010 Hb_005643_080 Hb_005643_080 Hb_002783_210--Hb_005643_080 Hb_005056_100 Hb_005056_100 Hb_101370_010--Hb_005056_100 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_001472_140 Hb_001472_140 Hb_004297_080--Hb_001472_140 Hb_004297_080--Hb_008406_030 Hb_000666_120 Hb_000666_120 Hb_004297_080--Hb_000666_120 Hb_002233_080 Hb_002233_080 Hb_004297_080--Hb_002233_080 Hb_000210_160 Hb_000210_160 Hb_004297_080--Hb_000210_160 Hb_004297_080--Hb_001675_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0121309 0.527311 0.355056 1.12198 0.0238876 0.104938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.032464 0.0207174 0.0772345 0.0231091

CAGE analysis