Hb_008643_100

Information

Type -
Description -
Location Contig8643: 98471-100204
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05820g
description POPTRDRAFT_576373; DC1 domain-containing family protein
nr
ID XP_012066524.1
description PREDICTED: uncharacterized protein LOC105629528 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10967 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dc1 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60891: 98557-99462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_100 0.0 - - PREDICTED: uncharacterized protein LOC105629528 [Jatropha curcas]
2 Hb_003057_110 0.08106445 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
3 Hb_011673_030 0.1047064975 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
4 Hb_000723_260 0.1075137979 - - ethylene insensitive protein, putative [Ricinus communis]
5 Hb_002150_030 0.1093349102 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
6 Hb_005977_090 0.1095138111 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
7 Hb_001623_510 0.1104293895 - - transporter, putative [Ricinus communis]
8 Hb_000815_210 0.1138729639 - - uncoupling protein 3, partial [Manihot esculenta]
9 Hb_000014_150 0.118439533 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000051_070 0.1185766204 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_001638_250 0.1195402154 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
12 Hb_007192_080 0.1199361715 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
13 Hb_000898_040 0.1214444379 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000005_380 0.1221680608 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
15 Hb_005489_110 0.1229291739 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
16 Hb_001199_020 0.1239900203 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
17 Hb_000358_150 0.1251501028 - - hypothetical protein VITISV_012309 [Vitis vinifera]
18 Hb_007586_030 0.1252795684 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
19 Hb_000608_030 0.1253508011 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
20 Hb_000907_080 0.127722884 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]

Gene co-expression network

sample Hb_008643_100 Hb_008643_100 Hb_003057_110 Hb_003057_110 Hb_008643_100--Hb_003057_110 Hb_011673_030 Hb_011673_030 Hb_008643_100--Hb_011673_030 Hb_000723_260 Hb_000723_260 Hb_008643_100--Hb_000723_260 Hb_002150_030 Hb_002150_030 Hb_008643_100--Hb_002150_030 Hb_005977_090 Hb_005977_090 Hb_008643_100--Hb_005977_090 Hb_001623_510 Hb_001623_510 Hb_008643_100--Hb_001623_510 Hb_001007_060 Hb_001007_060 Hb_003057_110--Hb_001007_060 Hb_004724_060 Hb_004724_060 Hb_003057_110--Hb_004724_060 Hb_001507_020 Hb_001507_020 Hb_003057_110--Hb_001507_020 Hb_001680_010 Hb_001680_010 Hb_003057_110--Hb_001680_010 Hb_000577_010 Hb_000577_010 Hb_003057_110--Hb_000577_010 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010 Hb_000152_820 Hb_000152_820 Hb_000723_260--Hb_000152_820 Hb_000538_200 Hb_000538_200 Hb_000723_260--Hb_000538_200 Hb_000723_260--Hb_002150_030 Hb_000317_020 Hb_000317_020 Hb_000723_260--Hb_000317_020 Hb_007586_030 Hb_007586_030 Hb_000723_260--Hb_007586_030 Hb_007757_110 Hb_007757_110 Hb_000723_260--Hb_007757_110 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_002150_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_002150_030--Hb_000977_180 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_006649_060 Hb_006649_060 Hb_002150_030--Hb_006649_060 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_005489_110 Hb_005489_110 Hb_001623_510--Hb_005489_110 Hb_000014_150 Hb_000014_150 Hb_001623_510--Hb_000014_150 Hb_001019_060 Hb_001019_060 Hb_001623_510--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_001623_510--Hb_007426_030 Hb_001266_080 Hb_001266_080 Hb_001623_510--Hb_001266_080 Hb_034271_030 Hb_034271_030 Hb_001623_510--Hb_034271_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53846 3.25928 1.90923 2.50098 9.39794 8.1188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8039 3.41605 8.14214 2.62256 4.42573

CAGE analysis