Hb_008643_110

Information

Type -
Description -
Location Contig8643: 120166-123016
Sequence    

Annotation

kegg
ID vvi:100254590
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID CDY62258.1
description BnaCnng39750D [Brassica napus]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID K3ZMG3
description Uncharacterized protein OS=Setaria italica GN=Si027778m.g PE=4 SV=1
Gene Ontology
ID GO:0003824
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_110 0.0 - - BnaCnng39750D [Brassica napus]
2 Hb_003209_200 0.2009357225 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
3 Hb_002659_040 0.2064133621 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
4 Hb_000003_270 0.2170445484 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
5 Hb_000424_210 0.2292661555 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
6 Hb_000477_080 0.2347324838 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
7 Hb_000003_040 0.2396341701 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
8 Hb_012291_030 0.2398540486 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
9 Hb_093458_050 0.2444705206 - - glutathione reductase [Hevea brasiliensis]
10 Hb_098315_030 0.2450942573 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
11 Hb_007590_060 0.2475447343 - - -
12 Hb_000316_020 0.2490840689 - - protein binding protein, putative [Ricinus communis]
13 Hb_000260_580 0.2506839738 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002600_040 0.2529210472 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
15 Hb_000161_150 0.2537411165 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
16 Hb_000196_080 0.2552947889 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_009314_010 0.2555401101 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_000162_140 0.2575267996 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
19 Hb_000562_040 0.2586865016 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
20 Hb_000700_130 0.2597235022 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008643_110 Hb_008643_110 Hb_003209_200 Hb_003209_200 Hb_008643_110--Hb_003209_200 Hb_002659_040 Hb_002659_040 Hb_008643_110--Hb_002659_040 Hb_000003_270 Hb_000003_270 Hb_008643_110--Hb_000003_270 Hb_000424_210 Hb_000424_210 Hb_008643_110--Hb_000424_210 Hb_000477_080 Hb_000477_080 Hb_008643_110--Hb_000477_080 Hb_000003_040 Hb_000003_040 Hb_008643_110--Hb_000003_040 Hb_003209_200--Hb_000003_270 Hb_000196_080 Hb_000196_080 Hb_003209_200--Hb_000196_080 Hb_003209_200--Hb_000424_210 Hb_002138_010 Hb_002138_010 Hb_003209_200--Hb_002138_010 Hb_010174_060 Hb_010174_060 Hb_003209_200--Hb_010174_060 Hb_012291_030 Hb_012291_030 Hb_003209_200--Hb_012291_030 Hb_002659_040--Hb_000424_210 Hb_000162_140 Hb_000162_140 Hb_002659_040--Hb_000162_140 Hb_001762_060 Hb_001762_060 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_001427_230 Hb_001427_230 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_000003_270--Hb_002138_010 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000003_270--Hb_000196_080 Hb_000424_210--Hb_000196_080 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000424_210--Hb_000162_140 Hb_000099_130 Hb_000099_130 Hb_000424_210--Hb_000099_130 Hb_011360_080 Hb_011360_080 Hb_000477_080--Hb_011360_080 Hb_000141_030 Hb_000141_030 Hb_000477_080--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_000477_080--Hb_000368_060 Hb_004429_070 Hb_004429_070 Hb_000477_080--Hb_004429_070 Hb_000562_040 Hb_000562_040 Hb_000477_080--Hb_000562_040 Hb_000103_110 Hb_000103_110 Hb_000477_080--Hb_000103_110 Hb_000003_040--Hb_010174_060 Hb_001021_130 Hb_001021_130 Hb_000003_040--Hb_001021_130 Hb_001199_050 Hb_001199_050 Hb_000003_040--Hb_001199_050 Hb_000789_220 Hb_000789_220 Hb_000003_040--Hb_000789_220 Hb_000003_040--Hb_003209_200 Hb_000116_010 Hb_000116_010 Hb_000003_040--Hb_000116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310808 0.183423 0.230852 0.239154 0.860949 0.0156258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2336 0.670849 2.37697 0.921391 0.0661092

CAGE analysis