Hb_008643_200

Information

Type transcription factor
Description TF Family: BES1
Location Contig8643: 173946-178092
Sequence    

Annotation

kegg
ID vvi:100241756
description BES1/BZR1 homolog protein 4
nr
ID XP_010644097.1
description PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
swissprot
ID Q9ZV88
description BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1
trembl
ID A0A067DLE1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020567mg PE=4 SV=1
Gene Ontology
ID GO:0006355
description bes1 bzr1 homolog protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60896: 174009-178057 , PASA_asmbl_60897: 174009-178057 , PASA_asmbl_60898: 176192-176606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_200 0.0 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
2 Hb_187679_010 0.11404229 - - -
3 Hb_001159_110 0.1165851912 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
4 Hb_000211_030 0.1171165752 - - sugar transporter, putative [Ricinus communis]
5 Hb_005074_030 0.1217718846 - - -
6 Hb_009620_020 0.1270205369 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000413_010 0.1271458185 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
8 Hb_000538_230 0.1282944892 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
9 Hb_000005_080 0.1297885062 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
10 Hb_007317_010 0.1315512993 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001247_100 0.1324799649 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
12 Hb_000430_020 0.1361617335 - - -
13 Hb_004052_050 0.1361770632 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
14 Hb_002042_130 0.1364051401 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
15 Hb_000178_130 0.1364071975 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
16 Hb_136509_010 0.1365478563 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
17 Hb_002217_020 0.1372059532 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
18 Hb_021068_040 0.1409081371 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
19 Hb_000608_050 0.1413712328 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_001856_200 0.1419276279 - - Esterase PIR7B, putative [Ricinus communis]

Gene co-expression network

sample Hb_008643_200 Hb_008643_200 Hb_187679_010 Hb_187679_010 Hb_008643_200--Hb_187679_010 Hb_001159_110 Hb_001159_110 Hb_008643_200--Hb_001159_110 Hb_000211_030 Hb_000211_030 Hb_008643_200--Hb_000211_030 Hb_005074_030 Hb_005074_030 Hb_008643_200--Hb_005074_030 Hb_009620_020 Hb_009620_020 Hb_008643_200--Hb_009620_020 Hb_000413_010 Hb_000413_010 Hb_008643_200--Hb_000413_010 Hb_001159_130 Hb_001159_130 Hb_187679_010--Hb_001159_130 Hb_155159_020 Hb_155159_020 Hb_187679_010--Hb_155159_020 Hb_001936_010 Hb_001936_010 Hb_187679_010--Hb_001936_010 Hb_027380_130 Hb_027380_130 Hb_187679_010--Hb_027380_130 Hb_000300_500 Hb_000300_500 Hb_187679_010--Hb_000300_500 Hb_084646_010 Hb_084646_010 Hb_187679_010--Hb_084646_010 Hb_000230_390 Hb_000230_390 Hb_001159_110--Hb_000230_390 Hb_001159_110--Hb_005074_030 Hb_000614_250 Hb_000614_250 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_000430_020 Hb_000430_020 Hb_001159_110--Hb_000430_020 Hb_007508_090 Hb_007508_090 Hb_001159_110--Hb_007508_090 Hb_000805_110 Hb_000805_110 Hb_000211_030--Hb_000805_110 Hb_189216_030 Hb_189216_030 Hb_000211_030--Hb_189216_030 Hb_002217_020 Hb_002217_020 Hb_000211_030--Hb_002217_020 Hb_003362_030 Hb_003362_030 Hb_000211_030--Hb_003362_030 Hb_001856_200 Hb_001856_200 Hb_000211_030--Hb_001856_200 Hb_005074_030--Hb_000430_020 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000538_230 Hb_000538_230 Hb_005074_030--Hb_000538_230 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_000749_050 Hb_000749_050 Hb_005074_030--Hb_000749_050 Hb_000071_070 Hb_000071_070 Hb_009620_020--Hb_000071_070 Hb_000225_060 Hb_000225_060 Hb_009620_020--Hb_000225_060 Hb_000011_400 Hb_000011_400 Hb_009620_020--Hb_000011_400 Hb_001123_320 Hb_001123_320 Hb_009620_020--Hb_001123_320 Hb_020025_040 Hb_020025_040 Hb_009620_020--Hb_020025_040 Hb_000483_260 Hb_000483_260 Hb_009620_020--Hb_000483_260 Hb_001481_120 Hb_001481_120 Hb_000413_010--Hb_001481_120 Hb_001205_070 Hb_001205_070 Hb_000413_010--Hb_001205_070 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9835 44.0151 33.0655 48.8642 13.4207 21.8244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.592 47.5574 61.566 30.1053 5.16022

CAGE analysis