Hb_008648_010

Information

Type -
Description -
Location Contig8648: 17866-23671
Sequence    

Annotation

kegg
ID rcu:RCOM_1478350
description Activator of basal transcription, putative
nr
ID XP_012071690.1
description PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
swissprot
ID Q59YL9
description Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ESF2 PE=3 SV=2
trembl
ID A0A067LGC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10228 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pre-rrna-processing protein esf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60912: 17858-22385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008648_010 0.0 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
2 Hb_002477_070 0.0671489841 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
3 Hb_000059_370 0.0697101748 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
4 Hb_012725_050 0.0705556229 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
5 Hb_005194_010 0.0721619016 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
6 Hb_001105_030 0.0748921425 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
7 Hb_032258_030 0.0758217751 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
8 Hb_002686_020 0.0817526221 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_001828_060 0.0833262719 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
10 Hb_002534_150 0.0839575824 - - catalytic, putative [Ricinus communis]
11 Hb_001292_020 0.0880805766 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
12 Hb_009838_080 0.0889486385 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_001662_150 0.0892533642 - - Scaffold attachment factor B1 [Medicago truncatula]
14 Hb_003398_130 0.0910606543 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
15 Hb_026549_040 0.0917846247 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
16 Hb_000373_120 0.0925176456 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
17 Hb_005306_170 0.0927690911 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
18 Hb_004994_100 0.0928779015 - - acyl-CoA thioesterase, putative [Ricinus communis]
19 Hb_006031_020 0.0955070297 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
20 Hb_007163_070 0.0956247596 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008648_010 Hb_008648_010 Hb_002477_070 Hb_002477_070 Hb_008648_010--Hb_002477_070 Hb_000059_370 Hb_000059_370 Hb_008648_010--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_008648_010--Hb_012725_050 Hb_005194_010 Hb_005194_010 Hb_008648_010--Hb_005194_010 Hb_001105_030 Hb_001105_030 Hb_008648_010--Hb_001105_030 Hb_032258_030 Hb_032258_030 Hb_008648_010--Hb_032258_030 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_002477_070--Hb_000059_370 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000521_050 Hb_000521_050 Hb_005194_010--Hb_000521_050 Hb_001828_060 Hb_001828_060 Hb_005194_010--Hb_001828_060 Hb_005194_010--Hb_002477_070 Hb_001828_190 Hb_001828_190 Hb_005194_010--Hb_001828_190 Hb_005194_010--Hb_002226_070 Hb_001105_030--Hb_001821_010 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_155159_030 Hb_155159_030 Hb_032258_030--Hb_155159_030 Hb_105123_010 Hb_105123_010 Hb_032258_030--Hb_105123_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2737 7.44172 13.5958 10.5365 29.3224 18.7591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6368 41.0873 22.5882 19.3187 18.2446

CAGE analysis