Hb_008667_020

Information

Type -
Description -
Location Contig8667: 10671-24281
Sequence    

Annotation

kegg
ID cam:101503808
description uncharacterized LOC101503808
nr
ID XP_004305999.2
description PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
swissprot
ID O48923
description Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 PE=2 SV=1
trembl
ID A0A0E0JXC1
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61025: 10924-12979 , PASA_asmbl_61026: 17881-18383 , PASA_asmbl_61029: 22710-23115 , PASA_asmbl_61030: 23173-23488 , PASA_asmbl_61031: 23677-23838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008667_020 0.0 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
2 Hb_021596_070 0.0630506096 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_007433_020 0.0762929941 - - hypothetical protein VITISV_005320 [Vitis vinifera]
4 Hb_011054_030 0.0930257865 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
5 Hb_111985_060 0.0966589313 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
6 Hb_007371_020 0.1085210809 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
7 Hb_004712_140 0.1201394377 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
8 Hb_001411_150 0.122817305 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
9 Hb_010962_030 0.1245618707 - - kinase, putative [Ricinus communis]
10 Hb_000123_310 0.125200513 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
11 Hb_000395_030 0.1275420813 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_019961_010 0.1295159225 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
13 Hb_000039_100 0.1302881831 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
14 Hb_005054_300 0.1309989239 - - aquaporin [Hevea brasiliensis]
15 Hb_012702_010 0.1323386785 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
16 Hb_007383_050 0.1335269909 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
17 Hb_003090_060 0.1356688844 - - PAR1 protein [Theobroma cacao]
18 Hb_025030_010 0.1391295801 - - -
19 Hb_000165_220 0.1417829893 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
20 Hb_041290_030 0.1418936406 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]

Gene co-expression network

sample Hb_008667_020 Hb_008667_020 Hb_021596_070 Hb_021596_070 Hb_008667_020--Hb_021596_070 Hb_007433_020 Hb_007433_020 Hb_008667_020--Hb_007433_020 Hb_011054_030 Hb_011054_030 Hb_008667_020--Hb_011054_030 Hb_111985_060 Hb_111985_060 Hb_008667_020--Hb_111985_060 Hb_007371_020 Hb_007371_020 Hb_008667_020--Hb_007371_020 Hb_004712_140 Hb_004712_140 Hb_008667_020--Hb_004712_140 Hb_021596_070--Hb_007433_020 Hb_010962_030 Hb_010962_030 Hb_021596_070--Hb_010962_030 Hb_021596_070--Hb_011054_030 Hb_021596_070--Hb_007371_020 Hb_021596_070--Hb_111985_060 Hb_019961_010 Hb_019961_010 Hb_007433_020--Hb_019961_010 Hb_001411_150 Hb_001411_150 Hb_007433_020--Hb_001411_150 Hb_007433_020--Hb_011054_030 Hb_007433_020--Hb_111985_060 Hb_000039_100 Hb_000039_100 Hb_011054_030--Hb_000039_100 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_011054_030--Hb_111985_060 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_003090_060 Hb_003090_060 Hb_111985_060--Hb_003090_060 Hb_111985_060--Hb_005054_300 Hb_002621_030 Hb_002621_030 Hb_111985_060--Hb_002621_030 Hb_007371_020--Hb_010962_030 Hb_000003_620 Hb_000003_620 Hb_007371_020--Hb_000003_620 Hb_000146_110 Hb_000146_110 Hb_007371_020--Hb_000146_110 Hb_009778_030 Hb_009778_030 Hb_007371_020--Hb_009778_030 Hb_010327_010 Hb_010327_010 Hb_007371_020--Hb_010327_010 Hb_041290_030 Hb_041290_030 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_001677_130 Hb_001677_130 Hb_004712_140--Hb_001677_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258323 223.367 29.8742 22.0003 1.51795 0.54283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667049 0.0104985 0 31.0705 9.17416

CAGE analysis