Hb_008667_050

Information

Type -
Description -
Location Contig8667: 43585-44701
Sequence    

Annotation

kegg
ID mdm:103437740
description serine/threonine-protein kinase HT1-like
nr
ID XP_008374458.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067FQV6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018489mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008667_050 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
2 Hb_000331_320 0.1328112619 - - -
3 Hb_001047_140 0.1635759488 - - -
4 Hb_000453_210 0.165938311 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
5 Hb_003209_030 0.1688161002 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
6 Hb_005690_020 0.1765734121 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
7 Hb_000529_240 0.1796893133 - - -
8 Hb_001143_010 0.2038519561 - - -
9 Hb_009139_010 0.2175007044 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
10 Hb_001495_060 0.2194152289 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
11 Hb_056768_010 0.2200065905 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
12 Hb_000122_040 0.220507423 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
13 Hb_000331_310 0.2222395338 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
14 Hb_002471_160 0.2271492004 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
15 Hb_048197_010 0.236542864 - - -
16 Hb_004502_080 0.2379033998 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
17 Hb_001279_250 0.2398152416 - - PREDICTED: pectate lyase-like [Jatropha curcas]
18 Hb_080147_090 0.2398600837 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
19 Hb_150299_030 0.2400581833 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004586_450 0.2419600549 - - -

Gene co-expression network

sample Hb_008667_050 Hb_008667_050 Hb_000331_320 Hb_000331_320 Hb_008667_050--Hb_000331_320 Hb_001047_140 Hb_001047_140 Hb_008667_050--Hb_001047_140 Hb_000453_210 Hb_000453_210 Hb_008667_050--Hb_000453_210 Hb_003209_030 Hb_003209_030 Hb_008667_050--Hb_003209_030 Hb_005690_020 Hb_005690_020 Hb_008667_050--Hb_005690_020 Hb_000529_240 Hb_000529_240 Hb_008667_050--Hb_000529_240 Hb_000331_320--Hb_003209_030 Hb_000331_320--Hb_001047_140 Hb_000331_320--Hb_005690_020 Hb_000331_320--Hb_000529_240 Hb_000331_320--Hb_000453_210 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_001047_140--Hb_000453_210 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_001495_060 Hb_001495_060 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_000453_210--Hb_003209_030 Hb_003209_030--Hb_000529_240 Hb_003209_030--Hb_001495_060 Hb_003209_030--Hb_001047_140 Hb_080147_090 Hb_080147_090 Hb_005690_020--Hb_080147_090 Hb_005690_020--Hb_000331_310 Hb_002821_010 Hb_002821_010 Hb_005690_020--Hb_002821_010 Hb_073973_110 Hb_073973_110 Hb_005690_020--Hb_073973_110 Hb_000529_240--Hb_001495_060 Hb_000529_240--Hb_001047_140 Hb_000529_240--Hb_000453_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.621436 1.12956 0 0.0335162 1.02419 1.4376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58323 4.02391 0.238273 0.218672 0

CAGE analysis