Hb_008686_050

Information

Type -
Description -
Location Contig8686: 55737-56136
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008686_050 0.0 - - -
2 Hb_000049_320 0.0048076733 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
3 Hb_003486_040 0.0057529878 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_000373_090 0.0060930933 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
5 Hb_000834_120 0.0074784646 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
6 Hb_004881_090 0.0099594559 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
7 Hb_003914_040 0.0120978101 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
8 Hb_007040_020 0.012105367 - - -
9 Hb_000295_150 0.0129068414 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
10 Hb_006111_050 0.0142325626 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
11 Hb_000172_040 0.0163131666 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
12 Hb_126871_010 0.016738829 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
13 Hb_009615_140 0.0170527322 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
14 Hb_000125_050 0.017426946 - - -
15 Hb_039046_010 0.0186988824 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
16 Hb_000494_140 0.0189850384 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
17 Hb_000039_130 0.0211014004 - - -
18 Hb_053709_020 0.0230607923 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_184500_020 0.0231625984 - - -
20 Hb_004324_180 0.0239160652 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008686_050 Hb_008686_050 Hb_000049_320 Hb_000049_320 Hb_008686_050--Hb_000049_320 Hb_003486_040 Hb_003486_040 Hb_008686_050--Hb_003486_040 Hb_000373_090 Hb_000373_090 Hb_008686_050--Hb_000373_090 Hb_000834_120 Hb_000834_120 Hb_008686_050--Hb_000834_120 Hb_004881_090 Hb_004881_090 Hb_008686_050--Hb_004881_090 Hb_003914_040 Hb_003914_040 Hb_008686_050--Hb_003914_040 Hb_000049_320--Hb_003486_040 Hb_000049_320--Hb_000373_090 Hb_000049_320--Hb_000834_120 Hb_000049_320--Hb_004881_090 Hb_006111_050 Hb_006111_050 Hb_000049_320--Hb_006111_050 Hb_003486_040--Hb_000373_090 Hb_003486_040--Hb_000834_120 Hb_003486_040--Hb_004881_090 Hb_003486_040--Hb_006111_050 Hb_000373_090--Hb_000834_120 Hb_000373_090--Hb_004881_090 Hb_000373_090--Hb_006111_050 Hb_000834_120--Hb_004881_090 Hb_000834_120--Hb_006111_050 Hb_004881_090--Hb_006111_050 Hb_000172_040 Hb_000172_040 Hb_004881_090--Hb_000172_040 Hb_007040_020 Hb_007040_020 Hb_003914_040--Hb_007040_020 Hb_000295_150 Hb_000295_150 Hb_003914_040--Hb_000295_150 Hb_000125_050 Hb_000125_050 Hb_003914_040--Hb_000125_050 Hb_000494_140 Hb_000494_140 Hb_003914_040--Hb_000494_140 Hb_000039_130 Hb_000039_130 Hb_003914_040--Hb_000039_130 Hb_053709_020 Hb_053709_020 Hb_003914_040--Hb_053709_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.182226 0.538379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis