Hb_008686_080

Information

Type -
Description -
Location Contig8686: 95735-101916
Sequence    

Annotation

kegg
ID rcu:RCOM_0248850
description DNA-directed RNA polymerase II, putative
nr
ID XP_012085995.1
description PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
swissprot
ID Q9M1J2
description DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1
trembl
ID A0A067K1X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase v subunit 5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008686_080 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
2 Hb_007477_070 0.0827671286 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
3 Hb_001328_040 0.0874046551 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
4 Hb_001662_070 0.0884335426 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
5 Hb_003544_020 0.0910458168 - - PREDICTED: elongin-A [Jatropha curcas]
6 Hb_000805_120 0.0911715611 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
7 Hb_001221_320 0.0959285693 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
8 Hb_002045_040 0.0964952065 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_002820_110 0.0966491932 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
10 Hb_001195_480 0.0985495425 - - cop9 complex subunit, putative [Ricinus communis]
11 Hb_000771_120 0.0999347881 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
12 Hb_002349_040 0.0999631595 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
13 Hb_002811_260 0.1002533262 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
14 Hb_002374_570 0.1018562764 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_139294_020 0.103968204 - - vat protein [Cucumis melo]
16 Hb_001534_120 0.1041330258 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
17 Hb_032264_120 0.1042347377 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
18 Hb_001157_020 0.1044201499 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
19 Hb_001404_100 0.1046236947 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
20 Hb_001279_310 0.104681901 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_008686_080 Hb_008686_080 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_001328_040 Hb_001328_040 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_003544_020 Hb_003544_020 Hb_008686_080--Hb_003544_020 Hb_000805_120 Hb_000805_120 Hb_008686_080--Hb_000805_120 Hb_001221_320 Hb_001221_320 Hb_008686_080--Hb_001221_320 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_001662_070--Hb_025645_010 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_005773_060 Hb_005773_060 Hb_003544_020--Hb_005773_060 Hb_003544_020--Hb_001221_320 Hb_000186_190 Hb_000186_190 Hb_003544_020--Hb_000186_190 Hb_003544_020--Hb_002811_260 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_145880_030 Hb_145880_030 Hb_000805_120--Hb_145880_030 Hb_002045_040 Hb_002045_040 Hb_000805_120--Hb_002045_040 Hb_000805_120--Hb_001662_070 Hb_023226_040 Hb_023226_040 Hb_000805_120--Hb_023226_040 Hb_000251_070 Hb_000251_070 Hb_000805_120--Hb_000251_070 Hb_002349_040 Hb_002349_040 Hb_001221_320--Hb_002349_040 Hb_001221_320--Hb_002811_260 Hb_001221_320--Hb_005773_060 Hb_001454_400 Hb_001454_400 Hb_001221_320--Hb_001454_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2103 4.09484 14.4769 6.99984 9.88178 11.1566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.887 15.4341 10.5825 7.29589 3.82169

CAGE analysis