Hb_008689_010

Information

Type -
Description -
Location Contig8689: 24396-24908
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25330g
description hypothetical protein
nr
ID XP_006382043.1
description hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
swissprot
ID P59082
description Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
trembl
ID B9P5W1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25330g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008689_010 0.0 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
2 Hb_002193_080 0.059149201 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
3 Hb_005211_210 0.0694908239 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
4 Hb_003008_020 0.0828314782 - - auxin-responsive family protein [Populus trichocarpa]
5 Hb_003050_330 0.0841513046 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
6 Hb_005675_070 0.0893557654 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
7 Hb_001902_040 0.0931355128 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000201_010 0.0974098971 - - unnamed protein product [Vitis vinifera]
9 Hb_002986_030 0.1046991682 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
10 Hb_009522_020 0.1066149912 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
11 Hb_002043_070 0.1087486504 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
12 Hb_003494_150 0.1127268903 - - Silicon transporter, putative [Ricinus communis]
13 Hb_077774_010 0.1133908183 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_001242_040 0.1135353803 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
15 Hb_005790_010 0.1184681405 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
16 Hb_001158_250 0.1187573901 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015934_090 0.1190238161 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
18 Hb_013394_120 0.1192576768 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
19 Hb_000749_300 0.120845256 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
20 Hb_010222_060 0.1223605508 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008689_010 Hb_008689_010 Hb_002193_080 Hb_002193_080 Hb_008689_010--Hb_002193_080 Hb_005211_210 Hb_005211_210 Hb_008689_010--Hb_005211_210 Hb_003008_020 Hb_003008_020 Hb_008689_010--Hb_003008_020 Hb_003050_330 Hb_003050_330 Hb_008689_010--Hb_003050_330 Hb_005675_070 Hb_005675_070 Hb_008689_010--Hb_005675_070 Hb_001902_040 Hb_001902_040 Hb_008689_010--Hb_001902_040 Hb_002193_080--Hb_005211_210 Hb_002193_080--Hb_003050_330 Hb_002193_080--Hb_003008_020 Hb_000201_010 Hb_000201_010 Hb_002193_080--Hb_000201_010 Hb_002193_080--Hb_005675_070 Hb_002043_070 Hb_002043_070 Hb_005211_210--Hb_002043_070 Hb_005211_210--Hb_000201_010 Hb_005211_210--Hb_005675_070 Hb_000434_060 Hb_000434_060 Hb_005211_210--Hb_000434_060 Hb_003008_020--Hb_003050_330 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040 Hb_003494_150 Hb_003494_150 Hb_003050_330--Hb_003494_150 Hb_032202_010 Hb_032202_010 Hb_003050_330--Hb_032202_010 Hb_007666_010 Hb_007666_010 Hb_003050_330--Hb_007666_010 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_001541_210 Hb_001541_210 Hb_005675_070--Hb_001541_210 Hb_003893_130 Hb_003893_130 Hb_005675_070--Hb_003893_130 Hb_005675_070--Hb_077774_010 Hb_002986_030 Hb_002986_030 Hb_001902_040--Hb_002986_030 Hb_000749_300 Hb_000749_300 Hb_001902_040--Hb_000749_300 Hb_015934_090 Hb_015934_090 Hb_001902_040--Hb_015934_090 Hb_185726_010 Hb_185726_010 Hb_001902_040--Hb_185726_010 Hb_010978_020 Hb_010978_020 Hb_001902_040--Hb_010978_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0550506 22.8343 19.9211 48.6469 0 0.0986411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.257429 0 0 0.713013 49.8086

CAGE analysis