Hb_008695_040

Information

Type -
Description -
Location Contig8695: 36808-39021
Sequence    

Annotation

kegg
ID rcu:RCOM_1032660
description 30S ribosomal protein S13, putative
nr
ID XP_012078160.1
description PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9CA19
description Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1
trembl
ID A0A067KLU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12041 PE=3 SV=1
Gene Ontology
ID GO:0005763
description small ribosomal subunit protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61091: 36938-39002 , PASA_asmbl_61092: 36938-38985 , PASA_asmbl_61093: 39422-40088
cDNA
(Sanger)
(ID:Location)		 020_O15.ab1: 39437-39689 , 031_J23.ab1: 39437-39689

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_040 0.0 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
2 Hb_000840_190 0.070055328 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
3 Hb_001824_010 0.0781654416 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
4 Hb_001421_060 0.0784896749 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
5 Hb_002596_040 0.0818638343 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
6 Hb_076693_030 0.0850631448 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
7 Hb_002805_220 0.0898502778 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
8 Hb_033153_090 0.092963175 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
9 Hb_002662_030 0.0943626029 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
10 Hb_001814_070 0.0956184895 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
11 Hb_000086_550 0.0984093039 - - Os02g0814700 [Oryza sativa Japonica Group]
12 Hb_001016_030 0.0997664347 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
13 Hb_000342_100 0.1013428266 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
14 Hb_003599_040 0.1015507873 - - unnamed protein product [Vitis vinifera]
15 Hb_009711_020 0.1023703974 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
16 Hb_021056_020 0.1023839929 - - plasma membrane H+-ATPase [Hevea brasiliensis]
17 Hb_006816_530 0.1040641551 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_001616_040 0.1041897858 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
19 Hb_001047_240 0.1053753936 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
20 Hb_002296_040 0.1068417095 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_008695_040 Hb_008695_040 Hb_000840_190 Hb_000840_190 Hb_008695_040--Hb_000840_190 Hb_001824_010 Hb_001824_010 Hb_008695_040--Hb_001824_010 Hb_001421_060 Hb_001421_060 Hb_008695_040--Hb_001421_060 Hb_002596_040 Hb_002596_040 Hb_008695_040--Hb_002596_040 Hb_076693_030 Hb_076693_030 Hb_008695_040--Hb_076693_030 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220 Hb_010883_150 Hb_010883_150 Hb_000840_190--Hb_010883_150 Hb_046157_020 Hb_046157_020 Hb_000840_190--Hb_046157_020 Hb_000840_190--Hb_001421_060 Hb_000840_190--Hb_001824_010 Hb_000086_550 Hb_000086_550 Hb_000840_190--Hb_000086_550 Hb_001824_010--Hb_001421_060 Hb_001824_010--Hb_076693_030 Hb_001824_010--Hb_002596_040 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_002296_040 Hb_002296_040 Hb_002596_040--Hb_002296_040 Hb_002596_040--Hb_076693_030 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002662_030 Hb_002662_030 Hb_002596_040--Hb_002662_030 Hb_001047_240 Hb_001047_240 Hb_076693_030--Hb_001047_240 Hb_007875_030 Hb_007875_030 Hb_076693_030--Hb_007875_030 Hb_007735_030 Hb_007735_030 Hb_076693_030--Hb_007735_030 Hb_005736_060 Hb_005736_060 Hb_002805_220--Hb_005736_060 Hb_000342_100 Hb_000342_100 Hb_002805_220--Hb_000342_100 Hb_000207_400 Hb_000207_400 Hb_002805_220--Hb_000207_400 Hb_008695_050 Hb_008695_050 Hb_002805_220--Hb_008695_050 Hb_062226_140 Hb_062226_140 Hb_002805_220--Hb_062226_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0588 9.61225 14.104 22.0845 15.8455 36.1319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.366 55.0507 16.1468 24.0124 12.5263

CAGE analysis