Hb_008695_050

Information

Type -
Description -
Location Contig8695: 39684-40058
Sequence    

Annotation

kegg
ID rcu:RCOM_1032770
description hypothetical protein
nr
ID XP_002513825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJA6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61093: 39422-40088
cDNA
(Sanger)
(ID:Location)		 020_O15.ab1: 39437-39689 , 031_J23.ab1: 39437-39689

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001057_040 0.0813677181 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
3 Hb_001653_020 0.0903674584 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
4 Hb_005307_050 0.0904773572 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_000207_400 0.090811294 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
6 Hb_000414_130 0.0962347895 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
7 Hb_007928_030 0.0991876351 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
8 Hb_002805_220 0.1004031146 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
9 Hb_001054_100 0.1009532127 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
10 Hb_001047_240 0.1011566233 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
11 Hb_000701_100 0.1018094059 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
12 Hb_011344_120 0.1019434282 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
13 Hb_018124_010 0.1026671621 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
14 Hb_000210_120 0.1037898694 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
15 Hb_001215_040 0.1038411073 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001824_010 0.1041827543 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
17 Hb_000496_120 0.1042699295 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
18 Hb_000808_190 0.10470014 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
19 Hb_006573_020 0.1057804236 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
20 Hb_004734_040 0.1070288625 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]

Gene co-expression network

sample Hb_008695_050 Hb_008695_050 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_001653_020 Hb_001653_020 Hb_008695_050--Hb_001653_020 Hb_005307_050 Hb_005307_050 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_000414_130 Hb_000414_130 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_000406_080 Hb_000406_080 Hb_001057_040--Hb_000406_080 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_062226_140 Hb_062226_140 Hb_000207_400--Hb_062226_140 Hb_002805_220 Hb_002805_220 Hb_000207_400--Hb_002805_220 Hb_001047_240 Hb_001047_240 Hb_000207_400--Hb_001047_240 Hb_000207_400--Hb_000212_290 Hb_005391_040 Hb_005391_040 Hb_000207_400--Hb_005391_040 Hb_015778_010 Hb_015778_010 Hb_000414_130--Hb_015778_010 Hb_000665_050 Hb_000665_050 Hb_000414_130--Hb_000665_050 Hb_000030_030 Hb_000030_030 Hb_000414_130--Hb_000030_030 Hb_003502_060 Hb_003502_060 Hb_000414_130--Hb_003502_060 Hb_005306_180 Hb_005306_180 Hb_000414_130--Hb_005306_180 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_007928_030--Hb_005914_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5312 25.3792 19.7308 60.6497 16.5018 38.2083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.9872 86.4109 37.6035 52.3952 20.7611

CAGE analysis