Hb_008695_060

Information

Type -
Description -
Location Contig8695: 40988-41458
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08920g
description POPTRDRAFT_551505; hypothetical protein
nr
ID ABK96498.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID Q5Z676
description Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1
trembl
ID A9PJE5
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_060 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_001123_300 0.0594341376 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
3 Hb_028818_020 0.0889322 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
4 Hb_008705_080 0.0913754833 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
5 Hb_001105_150 0.0919250544 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
6 Hb_002170_030 0.093148407 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_000155_230 0.0957097256 - - rac gtpase, putative [Ricinus communis]
8 Hb_022092_070 0.101133629 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
9 Hb_000462_040 0.1011814679 - - ATSMC2, putative [Ricinus communis]
10 Hb_000805_060 0.1033533353 - - laccase, putative [Ricinus communis]
11 Hb_023342_010 0.1044179057 - - -
12 Hb_026198_080 0.1092268832 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
13 Hb_000260_520 0.1098914993 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_003038_070 0.110737854 - - syntaxin, putative [Ricinus communis]
15 Hb_140595_020 0.11244883 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
16 Hb_003906_080 0.1127395009 - - Peroxidase 66 precursor, putative [Ricinus communis]
17 Hb_140595_030 0.1135662135 - - -
18 Hb_004994_230 0.1147674413 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
19 Hb_034507_030 0.1153544985 - - PREDICTED: laccase-4-like [Jatropha curcas]
20 Hb_008518_060 0.1157901074 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_008695_060 Hb_008695_060 Hb_001123_300 Hb_001123_300 Hb_008695_060--Hb_001123_300 Hb_028818_020 Hb_028818_020 Hb_008695_060--Hb_028818_020 Hb_008705_080 Hb_008705_080 Hb_008695_060--Hb_008705_080 Hb_001105_150 Hb_001105_150 Hb_008695_060--Hb_001105_150 Hb_002170_030 Hb_002170_030 Hb_008695_060--Hb_002170_030 Hb_000155_230 Hb_000155_230 Hb_008695_060--Hb_000155_230 Hb_001123_300--Hb_028818_020 Hb_000462_040 Hb_000462_040 Hb_001123_300--Hb_000462_040 Hb_001123_300--Hb_008705_080 Hb_034507_030 Hb_034507_030 Hb_001123_300--Hb_034507_030 Hb_001123_300--Hb_000155_230 Hb_028818_020--Hb_000155_230 Hb_028818_020--Hb_001105_150 Hb_004994_230 Hb_004994_230 Hb_028818_020--Hb_004994_230 Hb_101705_040 Hb_101705_040 Hb_028818_020--Hb_101705_040 Hb_028818_020--Hb_034507_030 Hb_008705_080--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_001053_120 Hb_001053_120 Hb_008705_080--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_008705_080--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_008705_080--Hb_006351_090 Hb_001105_150--Hb_000155_230 Hb_140595_030 Hb_140595_030 Hb_001105_150--Hb_140595_030 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001104_070 Hb_001104_070 Hb_001105_150--Hb_001104_070 Hb_023342_010 Hb_023342_010 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_009158_040 Hb_002170_030--Hb_006351_090 Hb_002170_030--Hb_001053_120 Hb_002170_030--Hb_026198_080 Hb_000155_230--Hb_140595_030 Hb_000155_230--Hb_101705_040 Hb_140595_020 Hb_140595_020 Hb_000155_230--Hb_140595_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144363 2.36261 3.02475 30.9484 0.0594427 0.559652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.116514 0 0 53.2637

CAGE analysis