Hb_008695_100

Information

Type -
Description -
Location Contig8695: 81262-87104
Sequence    

Annotation

kegg
ID rcu:RCOM_1032860
description hypothetical protein
nr
ID XP_012078152.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K960
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12033 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61097: 81274-87105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_100 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
2 Hb_000723_080 0.0597404331 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_000567_120 0.0600103588 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
4 Hb_005162_070 0.0690339084 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010608_050 0.0749479005 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_000617_150 0.0750959138 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
7 Hb_002235_280 0.0769075411 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
8 Hb_004607_030 0.0777668312 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
9 Hb_001140_220 0.0799551592 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_016901_010 0.0833228368 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_000258_270 0.0838806122 - - PREDICTED: cullin-3A [Jatropha curcas]
12 Hb_000120_680 0.0846941574 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_001959_190 0.0886238506 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
14 Hb_004846_070 0.0889564461 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
15 Hb_008695_210 0.0889671732 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
16 Hb_013607_040 0.0893606244 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
17 Hb_011030_020 0.0897883011 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_001454_190 0.0932854647 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
19 Hb_003053_020 0.0943229357 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_019263_020 0.0944648829 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_008695_100 Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_000723_080--Hb_000567_120 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_000567_120--Hb_001140_220 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_010608_050--Hb_004607_030 Hb_010608_050--Hb_011030_020 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_002235_280--Hb_000617_150 Hb_002235_280--Hb_001140_220 Hb_002235_280--Hb_013607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5145 13.8932 6.46005 11.0014 12.0839 18.6253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3005 28.256 43.4505 9.24123 14.7802

CAGE analysis