Hb_008695_140

Information

Type -
Description -
Location Contig8695: 117320-126507
Sequence    

Annotation

kegg
ID rcu:RCOM_1033030
description Vacuolar protein sorting-associated protein VPS9, putative
nr
ID XP_002513841.1
description Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
swissprot
ID Q9LT31
description Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1
trembl
ID B9RJC2
description Vacuolar protein sorting-associated protein VPS9, putative OS=Ricinus communis GN=RCOM_1033030 PE=4 SV=1
Gene Ontology
ID GO:0016787
description vacuolar protein sorting-associated protein 9a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61105: 117497-126475 , PASA_asmbl_61106: 122171-126397 , PASA_asmbl_61107: 125158-125388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_140 0.0 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
2 Hb_000567_380 0.0934444783 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
3 Hb_002205_190 0.0945252262 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_007765_020 0.1124340456 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
5 Hb_000011_330 0.1130872942 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
6 Hb_001946_410 0.1228342931 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
7 Hb_004785_140 0.125889877 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
8 Hb_031862_130 0.1263771027 - - transcription factor, putative [Ricinus communis]
9 Hb_000092_010 0.1270247374 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
10 Hb_003976_030 0.1331371084 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
11 Hb_008159_010 0.1335795122 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
12 Hb_000442_080 0.1339240577 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
13 Hb_000215_080 0.1344807533 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
14 Hb_000723_200 0.139973166 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
15 Hb_000445_040 0.1422319547 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
16 Hb_012325_020 0.1438513251 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_001662_060 0.1456592389 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
18 Hb_003032_020 0.1460138286 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
19 Hb_005542_060 0.1478214079 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001811_030 0.1488647203 - - Beta-ureidopropionase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008695_140 Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_008695_140--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_008695_140--Hb_002205_190 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_000011_330 Hb_000011_330 Hb_008695_140--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_008695_140--Hb_001946_410 Hb_004785_140 Hb_004785_140 Hb_008695_140--Hb_004785_140 Hb_000567_380--Hb_000011_330 Hb_000567_380--Hb_002205_190 Hb_003976_030 Hb_003976_030 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_002205_190--Hb_000011_330 Hb_002205_190--Hb_004785_140 Hb_002205_190--Hb_003976_030 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_000092_010 Hb_000092_010 Hb_007765_020--Hb_000092_010 Hb_007765_020--Hb_003976_030 Hb_001014_040 Hb_001014_040 Hb_007765_020--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_007765_020--Hb_004079_030 Hb_001662_060 Hb_001662_060 Hb_007765_020--Hb_001662_060 Hb_005625_020 Hb_005625_020 Hb_007765_020--Hb_005625_020 Hb_000011_330--Hb_003976_030 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_001946_410--Hb_002205_190 Hb_001946_410--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_001946_410--Hb_000116_010 Hb_001946_410--Hb_000011_330 Hb_001946_410--Hb_004785_140 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.79949 7.6324 9.99679 8.28202 8.50204 10.9037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35348 6.74024 37.3015 13.3172 9.4827

CAGE analysis