Hb_008695_180

Information

Type -
Description -
Location Contig8695: 155141-156487
Sequence    

Annotation

kegg
ID rcu:RCOM_1033150
description eukaryotic translation initiation factor, putative
nr
ID AHA83527.1
description eukaryotic translation initiation factor [Hevea brasiliensis]
swissprot
ID P48724
description Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1
trembl
ID W5RRP1
description Eukaryotic translation initiation factor OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61111: 153488-156765 , PASA_asmbl_61112: 153730-154307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_180 0.0 - - eukaryotic translation initiation factor [Hevea brasiliensis]
2 Hb_001369_420 0.0687229487 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
3 Hb_000676_110 0.0717567219 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
4 Hb_002876_110 0.0810761001 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002200_080 0.0815092031 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
6 Hb_089032_040 0.0828646999 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
7 Hb_000051_070 0.0845405941 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
8 Hb_001252_080 0.0870335365 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
9 Hb_000107_330 0.08707976 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
10 Hb_000358_150 0.0870967608 - - hypothetical protein VITISV_012309 [Vitis vinifera]
11 Hb_001776_140 0.0873269845 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_001736_040 0.0881314967 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_003195_070 0.088239624 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_000025_140 0.0891014672 - - las1-like family protein [Populus trichocarpa]
15 Hb_000152_380 0.0898100559 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
16 Hb_000317_020 0.0916375336 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
17 Hb_023344_030 0.0923158217 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_000261_350 0.0923992325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
19 Hb_004221_020 0.0926612877 - - protein binding protein, putative [Ricinus communis]
20 Hb_000010_330 0.0936153279 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]

Gene co-expression network

sample Hb_008695_180 Hb_008695_180 Hb_001369_420 Hb_001369_420 Hb_008695_180--Hb_001369_420 Hb_000676_110 Hb_000676_110 Hb_008695_180--Hb_000676_110 Hb_002876_110 Hb_002876_110 Hb_008695_180--Hb_002876_110 Hb_002200_080 Hb_002200_080 Hb_008695_180--Hb_002200_080 Hb_089032_040 Hb_089032_040 Hb_008695_180--Hb_089032_040 Hb_000051_070 Hb_000051_070 Hb_008695_180--Hb_000051_070 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_001369_420--Hb_000676_110 Hb_001369_420--Hb_000051_070 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_000676_110--Hb_001493_030 Hb_000317_020 Hb_000317_020 Hb_002876_110--Hb_000317_020 Hb_004600_040 Hb_004600_040 Hb_002876_110--Hb_004600_040 Hb_006332_020 Hb_006332_020 Hb_002876_110--Hb_006332_020 Hb_004724_200 Hb_004724_200 Hb_002876_110--Hb_004724_200 Hb_001736_040 Hb_001736_040 Hb_002876_110--Hb_001736_040 Hb_000392_300 Hb_000392_300 Hb_002876_110--Hb_000392_300 Hb_000010_330 Hb_000010_330 Hb_002200_080--Hb_000010_330 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_019280_040 Hb_019280_040 Hb_002200_080--Hb_019280_040 Hb_007691_030 Hb_007691_030 Hb_002200_080--Hb_007691_030 Hb_003195_070 Hb_003195_070 Hb_002200_080--Hb_003195_070 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160 Hb_000395_190 Hb_000395_190 Hb_089032_040--Hb_000395_190 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_010128_080 Hb_010128_080 Hb_089032_040--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_089032_040--Hb_000061_460 Hb_005731_130 Hb_005731_130 Hb_089032_040--Hb_005731_130 Hb_089032_040--Hb_000676_110 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.651 95.3316 44.127 107.834 222.884 181.669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.4848 168.212 191.556 104.91 88.8433

CAGE analysis