Hb_008695_190

Information

Type transcription factor
Description TF Family: ARF
Location Contig8695: 158952-164372
Sequence    

Annotation

kegg
ID rcu:RCOM_1033160
description Auxin response factor, putative
nr
ID XP_012078139.1
description PREDICTED: auxin response factor 17 [Jatropha curcas]
swissprot
ID Q84WU6
description Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1
trembl
ID A0A067KCM5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_12025 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61113: 159399-162299 , PASA_asmbl_61115: 162802-162925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_190 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
2 Hb_000072_280 0.0727014757 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
3 Hb_025087_010 0.0737896815 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
4 Hb_001981_090 0.0812067142 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
5 Hb_001366_230 0.0871496022 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000809_040 0.089089534 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
7 Hb_004882_020 0.0897565102 - - -
8 Hb_001366_220 0.0934861869 - - conserved hypothetical protein [Ricinus communis]
9 Hb_183963_020 0.0956223208 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
10 Hb_005455_070 0.0966698259 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
11 Hb_000313_380 0.0972683325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001478_050 0.0975555965 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
13 Hb_001191_100 0.0979977472 - - F-actin capping protein beta subunit [Populus trichocarpa]
14 Hb_002326_030 0.0983900851 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
15 Hb_012522_030 0.0984626569 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001722_040 0.0993356369 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_000282_060 0.1008035282 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
18 Hb_003226_150 0.1011860089 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
19 Hb_007229_060 0.1014585162 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
20 Hb_009026_050 0.1044769303 - - vacuolar ATPase F subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_008695_190 Hb_008695_190 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_001191_100 Hb_001191_100 Hb_000072_280--Hb_001191_100 Hb_000072_280--Hb_004882_020 Hb_001366_220 Hb_001366_220 Hb_000072_280--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_000072_280--Hb_000085_310 Hb_000072_280--Hb_001366_230 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_025087_010--Hb_001366_230 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001981_090--Hb_001366_220 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_001366_230--Hb_001191_100 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000809_040--Hb_001366_220 Hb_000809_040--Hb_000313_380 Hb_000809_040--Hb_004882_020 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_004882_020--Hb_001981_090 Hb_004882_020--Hb_001366_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3088 5.61867 2.46967 2.57698 24.7035 24.598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1387 31.3737 37.8777 7.07411 1.70969

CAGE analysis