Hb_008695_210

Information

Type -
Description -
Location Contig8695: 171502-178459
Sequence    

Annotation

kegg
ID rcu:RCOM_1033180
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012078135.1
description PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
swissprot
ID Q84WV0
description Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1
trembl
ID A0A067K951
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_12023 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61117: 172580-178170 , PASA_asmbl_61119: 174338-174503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_210 0.0 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
2 Hb_000614_230 0.0546377682 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
3 Hb_006915_050 0.0567094595 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
4 Hb_000907_080 0.0577396159 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
5 Hb_189003_080 0.0598010926 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
6 Hb_000754_040 0.0658229189 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
7 Hb_002006_090 0.0674385146 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
8 Hb_000567_260 0.0685248299 - - BnaA09g41440D [Brassica napus]
9 Hb_001329_300 0.0732657601 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
10 Hb_002016_110 0.0761161016 - - transducin family protein [Populus trichocarpa]
11 Hb_001277_330 0.0774311461 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
12 Hb_000111_360 0.0798439988 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010172_050 0.081321717 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
14 Hb_000409_020 0.0816367673 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
15 Hb_002518_140 0.082840883 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
16 Hb_000000_250 0.0832708691 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
17 Hb_000457_150 0.0838968213 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
18 Hb_007951_050 0.0840272679 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_055062_030 0.0845228954 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
20 Hb_016901_010 0.0853145786 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008695_210 Hb_008695_210 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_006915_050 Hb_006915_050 Hb_008695_210--Hb_006915_050 Hb_000907_080 Hb_000907_080 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_002006_090 Hb_002006_090 Hb_008695_210--Hb_002006_090 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_000614_230--Hb_002006_090 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080 Hb_000907_080--Hb_189003_080 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000409_020 Hb_000409_020 Hb_000907_080--Hb_000409_020 Hb_000898_040 Hb_000898_040 Hb_000907_080--Hb_000898_040 Hb_189003_080--Hb_000567_260 Hb_189003_080--Hb_002016_110 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_000754_040--Hb_000111_360 Hb_001277_330 Hb_001277_330 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_000754_040--Hb_189003_080 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000001_140 Hb_002006_090--Hb_001085_170 Hb_002006_090--Hb_006915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3678 13.1589 7.47687 9.76302 17.5175 26.4223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.529 24.2124 44.1495 11.7818 13.0405

CAGE analysis