Hb_008695_220

Information

Type -
Description -
Location Contig8695: 180026-181100
Sequence    

Annotation

kegg
ID rcu:RCOM_1033190
description hypothetical protein
nr
ID XP_012078134.1
description PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RJC8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61121: 180868-181236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_220 0.0 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
2 Hb_007574_040 0.1363339255 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
3 Hb_000950_030 0.1583575897 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
4 Hb_017002_010 0.1618308568 - - PREDICTED: expansin-A15-like [Jatropha curcas]
5 Hb_000246_130 0.1656838301 - - tubulin alpha chain, putative [Ricinus communis]
6 Hb_000455_070 0.1773799824 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
7 Hb_014720_100 0.1796857317 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
8 Hb_000236_230 0.1821615842 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
9 Hb_000742_030 0.1822602517 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
10 Hb_000054_010 0.1831754893 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_001758_090 0.1852231798 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
12 Hb_034726_010 0.1889660618 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000030_130 0.1898790248 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_057556_010 0.1929262913 - - Light-regulated protein precursor, putative [Ricinus communis]
15 Hb_004055_020 0.1953357542 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
16 Hb_026527_010 0.1961316077 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
17 Hb_000226_120 0.1961733837 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
18 Hb_012707_010 0.1967588878 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
19 Hb_030565_100 0.1995573227 - - serine hydroxymethyltransferase, putative [Ricinus communis]
20 Hb_001989_100 0.2022010375 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]

Gene co-expression network

sample Hb_008695_220 Hb_008695_220 Hb_007574_040 Hb_007574_040 Hb_008695_220--Hb_007574_040 Hb_000950_030 Hb_000950_030 Hb_008695_220--Hb_000950_030 Hb_017002_010 Hb_017002_010 Hb_008695_220--Hb_017002_010 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_014720_100 Hb_014720_100 Hb_008695_220--Hb_014720_100 Hb_000297_140 Hb_000297_140 Hb_007574_040--Hb_000297_140 Hb_000054_010 Hb_000054_010 Hb_007574_040--Hb_000054_010 Hb_000622_120 Hb_000622_120 Hb_007574_040--Hb_000622_120 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_000622_190 Hb_000622_190 Hb_007574_040--Hb_000622_190 Hb_002157_270 Hb_002157_270 Hb_000950_030--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_017002_010--Hb_014720_100 Hb_178968_040 Hb_178968_040 Hb_017002_010--Hb_178968_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_004079_050 Hb_004079_050 Hb_017002_010--Hb_004079_050 Hb_019516_060 Hb_019516_060 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_014720_100--Hb_178968_040 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120323 0.417235 0.562349 7.33127 0.0229901 0.283981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.682594 0.825912 0.227595 0.46532 2.52915

CAGE analysis