Hb_008698_010

Information

Type -
Description -
Location Contig8698: 20842-22434
Sequence    

Annotation

kegg
ID rcu:RCOM_0799010
description Glutamyl-tRNA(Gln) amidotransferase subunit C, putative
nr
ID XP_012077343.1
description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID B9RRX2
description Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1
trembl
ID A0A067GMN3
description Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Citrus sinensis GN=GATC PE=3 SV=1
Gene Ontology
ID GO:0005739
description glutamyl-trna amidotransferase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008698_010 0.0 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_001621_060 0.1071064705 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
3 Hb_000460_070 0.1240429022 - - luminal binding protein [Gossypium hirsutum]
4 Hb_002534_030 0.1250518105 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_001792_030 0.1304310658 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
6 Hb_001229_020 0.1311784272 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_002078_300 0.1385753103 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
8 Hb_000189_520 0.1514542957 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_010577_040 0.1560516624 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
10 Hb_067069_010 0.161847009 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
11 Hb_005282_020 0.1643952481 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
12 Hb_001484_080 0.1647405328 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_005725_220 0.1653747904 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
14 Hb_000156_210 0.1656369518 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
15 Hb_000318_130 0.1683181056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000058_080 0.1716032113 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_003124_110 0.1743772438 - - hypothetical protein VITISV_026680 [Vitis vinifera]
18 Hb_000140_270 0.1760567565 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
19 Hb_001138_060 0.1783188761 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
20 Hb_005588_110 0.1786208016 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]

Gene co-expression network

sample Hb_008698_010 Hb_008698_010 Hb_001621_060 Hb_001621_060 Hb_008698_010--Hb_001621_060 Hb_000460_070 Hb_000460_070 Hb_008698_010--Hb_000460_070 Hb_002534_030 Hb_002534_030 Hb_008698_010--Hb_002534_030 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_001229_020 Hb_001229_020 Hb_008698_010--Hb_001229_020 Hb_002078_300 Hb_002078_300 Hb_008698_010--Hb_002078_300 Hb_001621_060--Hb_001792_030 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_000189_520 Hb_000189_520 Hb_001621_060--Hb_000189_520 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_000460_070--Hb_001229_020 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_000460_070--Hb_001621_060 Hb_000460_070--Hb_000189_520 Hb_007054_050 Hb_007054_050 Hb_000460_070--Hb_007054_050 Hb_005588_110 Hb_005588_110 Hb_002534_030--Hb_005588_110 Hb_067069_010 Hb_067069_010 Hb_002534_030--Hb_067069_010 Hb_002534_030--Hb_002078_300 Hb_001484_080 Hb_001484_080 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001229_020--Hb_001621_060 Hb_001229_020--Hb_002078_300 Hb_001229_020--Hb_002534_030 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_002078_300--Hb_004109_160 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303175 0.430503 1.37382 1.04359 0.408096 0.613835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43451 2.55243 2.55597 1.27735 8.38508

CAGE analysis