Hb_008699_020

Information

Type -
Description -
Location Contig8699: 33569-37217
Sequence    

Annotation

kegg
ID tcc:TCM_011621
description Eukaryotic elongation factor 5A-1 isoform 1
nr
ID AAQ08194.1
description eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID Q71F48
description Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1
Gene Ontology
ID GO:0003746
description eukaryotic translation initiation factor 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61122: 33741-37122
cDNA
(Sanger)
(ID:Location)		 045_A20.ab1: 33741-37006

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008699_020 0.0 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
2 Hb_001824_010 0.0931360293 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_000820_130 0.1025359591 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
4 Hb_002107_120 0.1063338121 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
5 Hb_001700_020 0.1075825199 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
6 Hb_000212_470 0.1101194785 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
7 Hb_007304_070 0.1129186719 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_000364_030 0.1135765846 - - RNA binding protein, putative [Ricinus communis]
9 Hb_000506_120 0.114816361 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
10 Hb_001054_100 0.1160862717 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
11 Hb_054074_010 0.1169023308 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
12 Hb_000836_140 0.119460879 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
13 Hb_029904_040 0.1202004469 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
14 Hb_005736_060 0.12087434 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
15 Hb_008695_040 0.1209849674 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
16 Hb_000483_250 0.1213568416 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
17 Hb_000312_090 0.1215446808 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
18 Hb_010883_150 0.1222184743 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
19 Hb_002631_020 0.1222707669 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
20 Hb_006816_530 0.1235365727 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_008699_020 Hb_008699_020 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_003053_030 Hb_003053_030 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_003376_130 Hb_003376_130 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140 Hb_005211_190 Hb_005211_190 Hb_002107_120--Hb_005211_190 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001016_090 Hb_001016_090 Hb_001700_020--Hb_001016_090 Hb_001700_020--Hb_000163_130 Hb_001700_020--Hb_000780_210 Hb_000389_080 Hb_000389_080 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_003226_220 Hb_003226_220 Hb_000212_470--Hb_003226_220 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_000111_340 Hb_000111_340 Hb_007304_070--Hb_000111_340 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_002431_050 Hb_002431_050 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.202 51.9472 38.4447 138.927 83.3166 127.286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
440.476 412.576 135.845 160.544 53.3038

CAGE analysis