Hb_008699_040

Information

Type -
Description -
Location Contig8699: 56214-56757
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008699_040 0.0 - - -
2 Hb_004474_010 0.1418279772 - - unnamed protein product [Coffea canephora]
3 Hb_000847_140 0.1421337371 - - -
4 Hb_001723_080 0.1467091423 - - hypothetical protein L484_026139 [Morus notabilis]
5 Hb_075653_020 0.1553562694 - - -
6 Hb_005539_210 0.1608960601 - - -
7 Hb_004680_020 0.1644879508 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
8 Hb_003777_230 0.1726810452 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
9 Hb_003349_070 0.172920207 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
10 Hb_000454_110 0.1763085598 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
11 Hb_000039_170 0.1815996325 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
12 Hb_080477_060 0.1881086711 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008705_090 0.1884886578 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
14 Hb_012305_120 0.1912637875 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
15 Hb_001007_050 0.1912824732 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
16 Hb_001623_430 0.1916304756 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
17 Hb_030954_020 0.1920581022 - - hypothetical protein RCOM_1330200 [Ricinus communis]
18 Hb_004635_060 0.1925556349 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
19 Hb_000106_100 0.1927368328 - - -
20 Hb_000300_400 0.1979416079 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_008699_040 Hb_008699_040 Hb_004474_010 Hb_004474_010 Hb_008699_040--Hb_004474_010 Hb_000847_140 Hb_000847_140 Hb_008699_040--Hb_000847_140 Hb_001723_080 Hb_001723_080 Hb_008699_040--Hb_001723_080 Hb_075653_020 Hb_075653_020 Hb_008699_040--Hb_075653_020 Hb_005539_210 Hb_005539_210 Hb_008699_040--Hb_005539_210 Hb_004680_020 Hb_004680_020 Hb_008699_040--Hb_004680_020 Hb_003349_070 Hb_003349_070 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_004474_010--Hb_004680_020 Hb_004474_010--Hb_001723_080 Hb_012305_120 Hb_012305_120 Hb_000847_140--Hb_012305_120 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_015978_070 Hb_015978_070 Hb_000847_140--Hb_015978_070 Hb_000847_140--Hb_004474_010 Hb_001623_430 Hb_001623_430 Hb_000847_140--Hb_001623_430 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210 Hb_075653_020--Hb_001623_430 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_075653_020--Hb_001723_080 Hb_005539_210--Hb_000300_400 Hb_005539_210--Hb_012395_210 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_005539_210--Hb_001723_080 Hb_005009_020 Hb_005009_020 Hb_004680_020--Hb_005009_020 Hb_004680_020--Hb_075653_020 Hb_004680_020--Hb_008705_090 Hb_004680_020--Hb_001723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.92581 0.130428 0 0 0.541538 2.83673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14941 7.43883 1.87695 1.64374 0

CAGE analysis