Hb_008705_020

Information

Type -
Description -
Location Contig8705: 8332-18546
Sequence    

Annotation

kegg
ID rcu:RCOM_0468850
description hypothetical protein
nr
ID XP_012078000.1
description PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q08BT5
description LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1
trembl
ID B9SQ10
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0468850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61156: 8550-9285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008705_020 0.0 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
2 Hb_001195_770 0.0470348219 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_003053_110 0.055801408 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
4 Hb_030736_040 0.0682303033 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
5 Hb_000167_110 0.0708126626 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_006907_060 0.0727684732 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_000941_100 0.0733915083 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
8 Hb_055690_010 0.0734404645 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_012150_030 0.0770781636 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_002025_250 0.0771683358 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
11 Hb_000032_500 0.0779964086 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_004705_160 0.0784603488 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
13 Hb_000529_180 0.0789137188 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
14 Hb_048093_010 0.0795002163 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
15 Hb_002762_110 0.0814802973 - - conserved hypothetical protein [Ricinus communis]
16 Hb_134849_010 0.0817247268 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_000046_540 0.0817958381 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
18 Hb_028487_070 0.0821378893 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010863_050 0.083829167 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_000270_480 0.0877890083 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]

Gene co-expression network

sample Hb_008705_020 Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_003053_110 Hb_003053_110 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_008705_020--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_008705_020--Hb_000941_100 Hb_001195_770--Hb_003053_110 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_106890_010 Hb_106890_010 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_012150_030 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36136 2.25655 4.82348 4.25294 1.94183 1.67537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33662 2.30925 2.38173 2.8896 7.60587

CAGE analysis