Hb_008705_080

Information

Type transcription factor
Description TF Family: C3H
Location Contig8705: 47974-51477
Sequence    

Annotation

kegg
ID rcu:RCOM_0467770
description zinc finger protein, putative
nr
ID XP_012078032.1
description PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
swissprot
ID Q9C9N3
description Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1
trembl
ID A0A067KL69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13051 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61161: 49825-50028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008705_080 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
2 Hb_002170_030 0.0494547512 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_026198_080 0.0570965792 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
4 Hb_000805_060 0.0611360519 - - laccase, putative [Ricinus communis]
5 Hb_001053_120 0.0616770005 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_009158_040 0.0621424137 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
7 Hb_006351_090 0.0630745154 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
8 Hb_000462_040 0.0666672196 - - ATSMC2, putative [Ricinus communis]
9 Hb_001123_300 0.0668988421 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
10 Hb_001163_010 0.0693004616 - - PREDICTED: syncoilin [Jatropha curcas]
11 Hb_007281_010 0.0703786903 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_034507_030 0.0772412829 - - PREDICTED: laccase-4-like [Jatropha curcas]
13 Hb_023342_010 0.0779773484 - - -
14 Hb_038927_020 0.0781854768 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
15 Hb_008518_060 0.0799750042 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
16 Hb_002311_010 0.0825056111 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
17 Hb_001014_180 0.0831782592 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
18 Hb_004994_230 0.0860640048 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
19 Hb_000416_020 0.0879396181 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000029_210 0.0896253955 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008705_080 Hb_008705_080 Hb_002170_030 Hb_002170_030 Hb_008705_080--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_008705_080--Hb_026198_080 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_001053_120 Hb_001053_120 Hb_008705_080--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_008705_080--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_008705_080--Hb_006351_090 Hb_023342_010 Hb_023342_010 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_009158_040 Hb_002170_030--Hb_006351_090 Hb_002170_030--Hb_001053_120 Hb_002170_030--Hb_026198_080 Hb_026198_080--Hb_009158_040 Hb_026198_080--Hb_001053_120 Hb_026198_080--Hb_023342_010 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010 Hb_002311_020 Hb_002311_020 Hb_000805_060--Hb_002311_020 Hb_034507_030 Hb_034507_030 Hb_000805_060--Hb_034507_030 Hb_004994_230 Hb_004994_230 Hb_000805_060--Hb_004994_230 Hb_007281_010 Hb_007281_010 Hb_000805_060--Hb_007281_010 Hb_001014_180 Hb_001014_180 Hb_000805_060--Hb_001014_180 Hb_001053_120--Hb_009158_040 Hb_001163_010 Hb_001163_010 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_001053_120--Hb_000029_210 Hb_009158_040--Hb_023342_010 Hb_009158_040--Hb_006351_090 Hb_009158_040--Hb_001163_010 Hb_003906_080 Hb_003906_080 Hb_006351_090--Hb_003906_080 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0710272 0.850724 2.02066 21.1003 0.0835459 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.1017 28.3069

CAGE analysis