Hb_008705_090

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig8705: 58217-59751
Sequence    

Annotation

kegg
ID rcu:RCOM_0467650
description ccaat-binding transcription factor, putative
nr
ID XP_012078033.1
description PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
swissprot
ID Q8LCG7
description Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2
trembl
ID B9SQ00
description Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_0467650 PE=4 SV=1
Gene Ontology
ID GO:0000786
description nuclear transcription factor y subunit c-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008705_090 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
2 Hb_001007_050 0.1285237495 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
3 Hb_002260_020 0.1309392147 - - -
4 Hb_001723_080 0.1323850432 - - hypothetical protein L484_026139 [Morus notabilis]
5 Hb_003777_230 0.1394695636 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
6 Hb_010172_100 0.1427874442 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
7 Hb_000454_110 0.1462093291 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
8 Hb_004474_010 0.1466989824 - - unnamed protein product [Coffea canephora]
9 Hb_003349_070 0.1556583408 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
10 Hb_103752_010 0.1589935905 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
11 Hb_010166_020 0.1597593376 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
12 Hb_150299_030 0.1630417854 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011689_050 0.1656133856 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
14 Hb_008557_020 0.1667221085 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
15 Hb_000684_160 0.1669970022 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
16 Hb_168711_010 0.1678628893 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
17 Hb_010594_030 0.1679754941 - - -
18 Hb_002326_180 0.1741224781 - - Protein Z, putative [Ricinus communis]
19 Hb_006351_110 0.1744259295 - - -
20 Hb_000052_010 0.1750260653 - - hypothetical protein M569_08416, partial [Genlisea aurea]

Gene co-expression network

sample Hb_008705_090 Hb_008705_090 Hb_001007_050 Hb_001007_050 Hb_008705_090--Hb_001007_050 Hb_002260_020 Hb_002260_020 Hb_008705_090--Hb_002260_020 Hb_001723_080 Hb_001723_080 Hb_008705_090--Hb_001723_080 Hb_003777_230 Hb_003777_230 Hb_008705_090--Hb_003777_230 Hb_010172_100 Hb_010172_100 Hb_008705_090--Hb_010172_100 Hb_000454_110 Hb_000454_110 Hb_008705_090--Hb_000454_110 Hb_001007_050--Hb_010172_100 Hb_001007_050--Hb_003777_230 Hb_004474_010 Hb_004474_010 Hb_001007_050--Hb_004474_010 Hb_001101_010 Hb_001101_010 Hb_001007_050--Hb_001101_010 Hb_001007_050--Hb_002260_020 Hb_080477_060 Hb_080477_060 Hb_002260_020--Hb_080477_060 Hb_008887_040 Hb_008887_040 Hb_002260_020--Hb_008887_040 Hb_168711_010 Hb_168711_010 Hb_002260_020--Hb_168711_010 Hb_003349_070 Hb_003349_070 Hb_002260_020--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_002260_020--Hb_030954_020 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210 Hb_000052_010 Hb_000052_010 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_010166_020 Hb_010166_020 Hb_003777_230--Hb_010166_020 Hb_007741_040 Hb_007741_040 Hb_003777_230--Hb_007741_040 Hb_004055_060 Hb_004055_060 Hb_003777_230--Hb_004055_060 Hb_005908_040 Hb_005908_040 Hb_010172_100--Hb_005908_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_000316_100 Hb_000316_100 Hb_010172_100--Hb_000316_100 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080 Hb_000454_110--Hb_001012_040 Hb_103752_010 Hb_103752_010 Hb_000454_110--Hb_103752_010 Hb_149683_010 Hb_149683_010 Hb_000454_110--Hb_149683_010 Hb_000039_170 Hb_000039_170 Hb_000454_110--Hb_000039_170 Hb_000454_110--Hb_012395_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61502 0.658458 0.688603 0.245676 2.69098 5.54648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0372 21.8577 6.39082 0.764483 0

CAGE analysis