Hb_008707_030

Information

Type -
Description -
Location Contig8707: 43116-48411
Sequence    

Annotation

kegg
ID egr:104447982
description uncharacterized LOC104447982
nr
ID XP_010060044.1
description PREDICTED: uncharacterized protein LOC104447982 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059DII2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02683 PE=4 SV=1
Gene Ontology
ID GO:0071704
description caax amino terminal protease family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61166: 43726-43924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008707_030 0.0 - - PREDICTED: uncharacterized protein LOC104447982 [Eucalyptus grandis]
2 Hb_095471_010 0.2209217533 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
3 Hb_129067_010 0.249368806 - - Cytochrome P450 superfamily protein [Theobroma cacao]
4 Hb_151628_010 0.2605887316 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_088542_010 0.2719000801 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_123104_010 0.2721143002 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_143397_010 0.2767681747 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
8 Hb_000313_320 0.2815802482 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_002477_230 0.2829568419 - - PREDICTED: verprolin [Jatropha curcas]
10 Hb_001632_010 0.283887145 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
11 Hb_011639_070 0.2851382285 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
12 Hb_032264_130 0.285401088 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
13 Hb_005797_050 0.2905437328 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
14 Hb_007382_040 0.2932712571 - - uncharacterized LOC105644857 [Jatropha curcas]
15 Hb_001902_020 0.2950530321 - - -
16 Hb_000733_040 0.2988282577 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
17 Hb_001691_050 0.2999542855 - - -
18 Hb_000101_180 0.3008929251 - - -
19 Hb_000605_010 0.3017405298 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_019654_120 0.3034003978 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_008707_030 Hb_008707_030 Hb_095471_010 Hb_095471_010 Hb_008707_030--Hb_095471_010 Hb_129067_010 Hb_129067_010 Hb_008707_030--Hb_129067_010 Hb_151628_010 Hb_151628_010 Hb_008707_030--Hb_151628_010 Hb_088542_010 Hb_088542_010 Hb_008707_030--Hb_088542_010 Hb_123104_010 Hb_123104_010 Hb_008707_030--Hb_123104_010 Hb_143397_010 Hb_143397_010 Hb_008707_030--Hb_143397_010 Hb_000313_320 Hb_000313_320 Hb_095471_010--Hb_000313_320 Hb_095471_010--Hb_129067_010 Hb_000365_260 Hb_000365_260 Hb_095471_010--Hb_000365_260 Hb_000465_120 Hb_000465_120 Hb_095471_010--Hb_000465_120 Hb_000815_100 Hb_000815_100 Hb_095471_010--Hb_000815_100 Hb_032264_130 Hb_032264_130 Hb_095471_010--Hb_032264_130 Hb_129067_010--Hb_088542_010 Hb_001632_010 Hb_001632_010 Hb_129067_010--Hb_001632_010 Hb_000733_040 Hb_000733_040 Hb_129067_010--Hb_000733_040 Hb_073212_010 Hb_073212_010 Hb_129067_010--Hb_073212_010 Hb_012384_050 Hb_012384_050 Hb_129067_010--Hb_012384_050 Hb_000326_030 Hb_000326_030 Hb_151628_010--Hb_000326_030 Hb_002735_040 Hb_002735_040 Hb_151628_010--Hb_002735_040 Hb_000392_100 Hb_000392_100 Hb_151628_010--Hb_000392_100 Hb_001749_010 Hb_001749_010 Hb_151628_010--Hb_001749_010 Hb_000347_500 Hb_000347_500 Hb_151628_010--Hb_000347_500 Hb_088542_010--Hb_001632_010 Hb_088542_010--Hb_073212_010 Hb_001677_050 Hb_001677_050 Hb_088542_010--Hb_001677_050 Hb_000605_010 Hb_000605_010 Hb_088542_010--Hb_000605_010 Hb_088542_010--Hb_000733_040 Hb_000186_100 Hb_000186_100 Hb_123104_010--Hb_000186_100 Hb_123104_010--Hb_000313_320 Hb_002307_050 Hb_002307_050 Hb_123104_010--Hb_002307_050 Hb_017111_010 Hb_017111_010 Hb_123104_010--Hb_017111_010 Hb_000101_180 Hb_000101_180 Hb_123104_010--Hb_000101_180 Hb_002007_290 Hb_002007_290 Hb_123104_010--Hb_002007_290 Hb_001304_100 Hb_001304_100 Hb_143397_010--Hb_001304_100 Hb_001902_020 Hb_001902_020 Hb_143397_010--Hb_001902_020 Hb_104812_030 Hb_104812_030 Hb_143397_010--Hb_104812_030 Hb_007810_050 Hb_007810_050 Hb_143397_010--Hb_007810_050 Hb_143397_010--Hb_032264_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795483 0.0389309 0 0.0347294 0.143368 0.135246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.114579 0.0704552 0.09208 0

CAGE analysis