Hb_008707_040

Information

Type -
Description -
Location Contig8707: 51333-52607
Sequence    

Annotation

kegg
ID rcu:RCOM_1581500
description hypothetical protein
nr
ID XP_002513621.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84JK8
description Probable membrane-associated kinase regulator 6 OS=Arabidopsis thaliana GN=MAKR6 PE=2 SV=1
trembl
ID B9RIQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581500 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable membrane-associated kinase regulator 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008707_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001623_380 0.1161324844 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
3 Hb_003680_060 0.1245643276 - - hypothetical protein VITISV_022322 [Vitis vinifera]
4 Hb_006583_030 0.1271849569 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
5 Hb_000009_510 0.1284113323 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
6 Hb_000302_230 0.1314159864 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015175_040 0.1391098572 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001442_050 0.1497660434 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
9 Hb_006681_020 0.1499020091 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
10 Hb_000345_400 0.1520249136 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001135_070 0.1539566907 - - glutathione-s-transferase omega, putative [Ricinus communis]
12 Hb_005000_110 0.1541945621 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
13 Hb_000123_360 0.1548661415 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_033312_120 0.1558110739 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
15 Hb_002485_050 0.1578133319 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
16 Hb_000184_010 0.1579277241 - - mutt domain protein, putative [Ricinus communis]
17 Hb_000134_040 0.1584116527 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
18 Hb_110266_010 0.1590628049 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
19 Hb_003605_060 0.1597376613 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
20 Hb_002027_100 0.1601724056 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008707_040 Hb_008707_040 Hb_001623_380 Hb_001623_380 Hb_008707_040--Hb_001623_380 Hb_003680_060 Hb_003680_060 Hb_008707_040--Hb_003680_060 Hb_006583_030 Hb_006583_030 Hb_008707_040--Hb_006583_030 Hb_000009_510 Hb_000009_510 Hb_008707_040--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_008707_040--Hb_000302_230 Hb_015175_040 Hb_015175_040 Hb_008707_040--Hb_015175_040 Hb_001135_070 Hb_001135_070 Hb_001623_380--Hb_001135_070 Hb_001623_380--Hb_003680_060 Hb_002272_220 Hb_002272_220 Hb_001623_380--Hb_002272_220 Hb_177281_010 Hb_177281_010 Hb_001623_380--Hb_177281_010 Hb_000393_040 Hb_000393_040 Hb_001623_380--Hb_000393_040 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_006681_020 Hb_006681_020 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_000009_510--Hb_006681_020 Hb_000009_510--Hb_000302_230 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_137216_010 Hb_137216_010 Hb_000009_510--Hb_137216_010 Hb_000174_080 Hb_000174_080 Hb_000009_510--Hb_000174_080 Hb_000009_510--Hb_006583_030 Hb_000302_230--Hb_000393_040 Hb_000302_230--Hb_006681_020 Hb_000302_230--Hb_137216_010 Hb_000302_230--Hb_003680_060 Hb_015175_040--Hb_006583_030 Hb_005488_160 Hb_005488_160 Hb_015175_040--Hb_005488_160 Hb_015175_040--Hb_010557_010 Hb_000442_070 Hb_000442_070 Hb_015175_040--Hb_000442_070 Hb_002411_100 Hb_002411_100 Hb_015175_040--Hb_002411_100 Hb_015175_040--Hb_000302_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.371391 2.90522 22.2827 4.86589 0.129629 0.268225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0860303 2.53764 0.439464 0.678335 17.9456

CAGE analysis