Hb_008725_020

Information

Type -
Description -
Location Contig8725: 17126-18058
Sequence    

Annotation

kegg
ID rcu:RCOM_1047720
description cytidine deaminase 1, 2, 7, putative (EC:3.5.4.5)
nr
ID XP_012082834.1
description PREDICTED: cytidine deaminase 1 [Jatropha curcas]
swissprot
ID O65896
description Cytidine deaminase 1 OS=Arabidopsis thaliana GN=CDA1 PE=1 SV=1
trembl
ID A0A067K8V8
description Cytidine deaminase OS=Jatropha curcas GN=JCGZ_13980 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cytidine deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61174: 17031-17206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_020 0.0 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
2 Hb_002325_050 0.0829722883 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
3 Hb_003849_200 0.0853865902 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_001562_030 0.0891400888 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
5 Hb_001013_080 0.0897347354 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_001198_180 0.0900407087 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
7 Hb_000991_080 0.0904774735 - - kinase, putative [Ricinus communis]
8 Hb_004634_030 0.0926457265 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002811_110 0.1001307943 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_000571_060 0.1002249363 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
11 Hb_002888_100 0.1004459299 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
12 Hb_012787_060 0.1016595898 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
13 Hb_153180_010 0.1017910307 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
14 Hb_002739_160 0.1018956869 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000162_070 0.1026107386 - - phospholipase C, putative [Ricinus communis]
16 Hb_003435_040 0.1048931111 - - tonoplast intrinsic protein [Hevea brasiliensis]
17 Hb_001048_070 0.1083180386 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
18 Hb_030827_080 0.1097249909 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
19 Hb_004659_100 0.1146309573 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002522_040 0.1155927713 - - hypothetical protein JCGZ_04542 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_020 Hb_008725_020 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_003849_200 Hb_003849_200 Hb_008725_020--Hb_003849_200 Hb_001562_030 Hb_001562_030 Hb_008725_020--Hb_001562_030 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_001198_180 Hb_001198_180 Hb_008725_020--Hb_001198_180 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080 Hb_189034_010 Hb_189034_010 Hb_002325_050--Hb_189034_010 Hb_004659_100 Hb_004659_100 Hb_002325_050--Hb_004659_100 Hb_002325_050--Hb_001198_180 Hb_010642_010 Hb_010642_010 Hb_002325_050--Hb_010642_010 Hb_002325_050--Hb_001562_030 Hb_003849_200--Hb_001013_080 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_003435_040 Hb_003435_040 Hb_003849_200--Hb_003435_040 Hb_000210_160 Hb_000210_160 Hb_003849_200--Hb_000210_160 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_001562_030--Hb_001198_180 Hb_002888_100 Hb_002888_100 Hb_001562_030--Hb_002888_100 Hb_002739_160 Hb_002739_160 Hb_001562_030--Hb_002739_160 Hb_092975_010 Hb_092975_010 Hb_001562_030--Hb_092975_010 Hb_030827_080 Hb_030827_080 Hb_001562_030--Hb_030827_080 Hb_001913_030 Hb_001913_030 Hb_001013_080--Hb_001913_030 Hb_001013_080--Hb_000991_080 Hb_001013_080--Hb_003435_040 Hb_000162_070 Hb_000162_070 Hb_001013_080--Hb_000162_070 Hb_001198_180--Hb_030827_080 Hb_002897_030 Hb_002897_030 Hb_001198_180--Hb_002897_030 Hb_001198_180--Hb_002739_160 Hb_011355_020 Hb_011355_020 Hb_001198_180--Hb_011355_020 Hb_000384_020 Hb_000384_020 Hb_000991_080--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_000991_080--Hb_173107_020 Hb_000991_080--Hb_003435_040 Hb_000991_080--Hb_000162_070 Hb_114733_010 Hb_114733_010 Hb_000991_080--Hb_114733_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.02411 34.305 23.9295 62.2488 0.0241942 0.160897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.217411 0 14.9598 13.4504

CAGE analysis