Hb_008725_040

Information

Type -
Description -
Location Contig8725: 21371-22459
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01650g
description POPTRDRAFT_661486; hypothetical protein
nr
ID XP_010262167.1
description PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
swissprot
ID Q94K18
description Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1
trembl
ID A0A0B0MJE5
description Putative-like protein OS=Gossypium arboreum GN=F383_00960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_040 0.0 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
2 Hb_010883_070 0.1822008487 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
3 Hb_103118_020 0.191663086 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
4 Hb_003913_080 0.1987232509 - - rpl27A [Hemiselmis andersenii]
5 Hb_116420_020 0.1997012165 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
6 Hb_004208_130 0.2053450078 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
7 Hb_000732_210 0.2091010778 - - hexose transporter 1 [Hevea brasiliensis]
8 Hb_003702_080 0.2253107951 - - cysteine protease, putative [Ricinus communis]
9 Hb_000594_090 0.2309165519 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
10 Hb_007885_050 0.2322958804 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
11 Hb_162275_020 0.2329517171 - - phosphate transporter [Manihot esculenta]
12 Hb_001096_030 0.2376251309 - - uridylate kinase plant, putative [Ricinus communis]
13 Hb_062135_020 0.2387244871 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
14 Hb_005000_180 0.2418669421 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
15 Hb_000836_490 0.2420679378 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
16 Hb_001307_210 0.2425247966 - - Os02g0814700 [Oryza sativa Japonica Group]
17 Hb_004931_100 0.2444743115 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
18 Hb_138585_040 0.245682877 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
19 Hb_000707_020 0.2459126607 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
20 Hb_005914_200 0.248392438 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_008725_040 Hb_008725_040 Hb_010883_070 Hb_010883_070 Hb_008725_040--Hb_010883_070 Hb_103118_020 Hb_103118_020 Hb_008725_040--Hb_103118_020 Hb_003913_080 Hb_003913_080 Hb_008725_040--Hb_003913_080 Hb_116420_020 Hb_116420_020 Hb_008725_040--Hb_116420_020 Hb_004208_130 Hb_004208_130 Hb_008725_040--Hb_004208_130 Hb_000732_210 Hb_000732_210 Hb_008725_040--Hb_000732_210 Hb_002272_090 Hb_002272_090 Hb_010883_070--Hb_002272_090 Hb_003702_080 Hb_003702_080 Hb_010883_070--Hb_003702_080 Hb_000367_030 Hb_000367_030 Hb_010883_070--Hb_000367_030 Hb_004333_030 Hb_004333_030 Hb_010883_070--Hb_004333_030 Hb_010883_070--Hb_103118_020 Hb_005914_200 Hb_005914_200 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_002518_290 Hb_002518_290 Hb_103118_020--Hb_002518_290 Hb_001307_210 Hb_001307_210 Hb_103118_020--Hb_001307_210 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_011377_020 Hb_011377_020 Hb_103118_020--Hb_011377_020 Hb_000161_150 Hb_000161_150 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_004064_020 Hb_004064_020 Hb_003913_080--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_003913_080--Hb_002151_050 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_009778_040 Hb_009778_040 Hb_116420_020--Hb_009778_040 Hb_000167_030 Hb_000167_030 Hb_116420_020--Hb_000167_030 Hb_025645_030 Hb_025645_030 Hb_116420_020--Hb_025645_030 Hb_001096_030 Hb_001096_030 Hb_116420_020--Hb_001096_030 Hb_007254_080 Hb_007254_080 Hb_116420_020--Hb_007254_080 Hb_005663_120 Hb_005663_120 Hb_116420_020--Hb_005663_120 Hb_000297_020 Hb_000297_020 Hb_004208_130--Hb_000297_020 Hb_000907_170 Hb_000907_170 Hb_004208_130--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_004208_130--Hb_145084_010 Hb_004931_100 Hb_004931_100 Hb_004208_130--Hb_004931_100 Hb_002138_010 Hb_002138_010 Hb_004208_130--Hb_002138_010 Hb_002609_060 Hb_002609_060 Hb_004208_130--Hb_002609_060 Hb_162275_020 Hb_162275_020 Hb_000732_210--Hb_162275_020 Hb_130719_010 Hb_130719_010 Hb_000732_210--Hb_130719_010 Hb_000117_100 Hb_000117_100 Hb_000732_210--Hb_000117_100 Hb_000614_170 Hb_000614_170 Hb_000732_210--Hb_000614_170 Hb_000732_210--Hb_000297_020 Hb_002217_230 Hb_002217_230 Hb_000732_210--Hb_002217_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0833356 0.695483 4.47755 1.1262 1.06911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94102 17.7654 9.11043 9.92553 0.302652

CAGE analysis