Hb_008725_050

Information

Type -
Description -
Location Contig8725: 22577-26543
Sequence    

Annotation

kegg
ID rcu:RCOM_1180040
description syntaxin, putative
nr
ID XP_002523140.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9SWH4
description Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1
trembl
ID B9SAX1
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1180040 PE=3 SV=1
Gene Ontology
ID GO:0005802
description syntaxin of plants 42 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61176: 22603-26166 , PASA_asmbl_61177: 22835-24832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_050 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_003687_120 0.0706607238 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
3 Hb_006452_180 0.0731324978 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_000956_040 0.0746028469 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
5 Hb_000890_160 0.0753017991 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
6 Hb_000156_090 0.0756936534 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
7 Hb_003428_090 0.0797954184 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
8 Hb_001009_120 0.0850881965 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
9 Hb_010287_020 0.0855762367 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_000866_140 0.0882753186 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
11 Hb_000034_110 0.0889257138 - - sentrin/sumo-specific protease, putative [Ricinus communis]
12 Hb_016461_020 0.0908011801 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001699_010 0.0935515556 - - drought-inducible protein [Manihot esculenta]
14 Hb_003018_030 0.0937279067 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
15 Hb_005288_140 0.0949586307 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
16 Hb_004319_050 0.0953365602 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
17 Hb_000260_770 0.0974668493 - - er lumen protein retaining receptor, putative [Ricinus communis]
18 Hb_002965_050 0.0975607091 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
19 Hb_000796_120 0.0982146083 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
20 Hb_010068_070 0.0988675178 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008725_050 Hb_008725_050 Hb_003687_120 Hb_003687_120 Hb_008725_050--Hb_003687_120 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_000890_160 Hb_000890_160 Hb_008725_050--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_008725_050--Hb_000156_090 Hb_003428_090 Hb_003428_090 Hb_008725_050--Hb_003428_090 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_010287_020 Hb_010287_020 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_001009_120 Hb_001009_120 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_000956_040--Hb_001009_120 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_000890_160--Hb_003428_090 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_002965_050 Hb_002965_050 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_000156_090--Hb_003428_090 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_003428_090--Hb_000866_140 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82617 9.39812 10.5933 6.56244 2.51425 3.47087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73154 3.45268 3.09353 5.78153 3.9865

CAGE analysis