Hb_008725_060

Information

Type -
Description -
Location Contig8725: 26786-29097
Sequence    

Annotation

kegg
ID rcu:RCOM_1180160
description Protein COBRA precursor, putative
nr
ID XP_002523142.1
description Protein COBRA precursor, putative [Ricinus communis]
swissprot
ID Q8GZ17
description COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2
trembl
ID B9SAX3
description Protein COBRA, putative OS=Ricinus communis GN=RCOM_1180160 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61179: 27318-27626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_060 0.0 - - Protein COBRA precursor, putative [Ricinus communis]
2 Hb_000009_220 0.1313105445 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
3 Hb_003746_030 0.1470836005 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
4 Hb_000369_010 0.1471888852 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002615_070 0.1475340259 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
6 Hb_001950_070 0.1525205765 - - cyclin d, putative [Ricinus communis]
7 Hb_014231_020 0.1534469427 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
8 Hb_000197_200 0.1541356467 - - Sec14 cytosolic factor, putative [Ricinus communis]
9 Hb_000979_060 0.1547156504 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
10 Hb_156635_020 0.1549752739 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
11 Hb_043792_010 0.1558551581 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
12 Hb_001005_020 0.1577629193 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
13 Hb_161568_010 0.1622127902 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_000089_210 0.16253516 - - unknown [Medicago truncatula]
15 Hb_000703_160 0.1626370778 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
16 Hb_003760_030 0.1628649231 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
17 Hb_009449_060 0.1631947665 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
18 Hb_003449_100 0.1633312499 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
19 Hb_000958_080 0.1637759689 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011671_310 0.163840385 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_060 Hb_008725_060 Hb_000009_220 Hb_000009_220 Hb_008725_060--Hb_000009_220 Hb_003746_030 Hb_003746_030 Hb_008725_060--Hb_003746_030 Hb_000369_010 Hb_000369_010 Hb_008725_060--Hb_000369_010 Hb_002615_070 Hb_002615_070 Hb_008725_060--Hb_002615_070 Hb_001950_070 Hb_001950_070 Hb_008725_060--Hb_001950_070 Hb_014231_020 Hb_014231_020 Hb_008725_060--Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000086_430 Hb_000086_430 Hb_000009_220--Hb_000086_430 Hb_000186_330 Hb_000186_330 Hb_003746_030--Hb_000186_330 Hb_001804_110 Hb_001804_110 Hb_003746_030--Hb_001804_110 Hb_007163_060 Hb_007163_060 Hb_003746_030--Hb_007163_060 Hb_000959_230 Hb_000959_230 Hb_003746_030--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_003746_030--Hb_010998_040 Hb_004223_110 Hb_004223_110 Hb_003746_030--Hb_004223_110 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_010080_010 Hb_010080_010 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_001277_280 Hb_001277_280 Hb_000369_010--Hb_001277_280 Hb_023765_020 Hb_023765_020 Hb_000369_010--Hb_023765_020 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220 Hb_000805_210 Hb_000805_210 Hb_002615_070--Hb_000805_210 Hb_007919_110 Hb_007919_110 Hb_002615_070--Hb_007919_110 Hb_000703_160 Hb_000703_160 Hb_002615_070--Hb_000703_160 Hb_003449_100 Hb_003449_100 Hb_002615_070--Hb_003449_100 Hb_000958_080 Hb_000958_080 Hb_002615_070--Hb_000958_080 Hb_005535_080 Hb_005535_080 Hb_002615_070--Hb_005535_080 Hb_001077_070 Hb_001077_070 Hb_001950_070--Hb_001077_070 Hb_001191_080 Hb_001191_080 Hb_001950_070--Hb_001191_080 Hb_004096_160 Hb_004096_160 Hb_001950_070--Hb_004096_160 Hb_004712_190 Hb_004712_190 Hb_001950_070--Hb_004712_190 Hb_001950_070--Hb_003449_100 Hb_100790_010 Hb_100790_010 Hb_001950_070--Hb_100790_010 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_014231_020--Hb_000703_160 Hb_005144_210 Hb_005144_210 Hb_014231_020--Hb_005144_210 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108692 0.135351 0.292734 0.163952 0.0997954 0.0472747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0235752 0.0927469 0.105412 0.0442956 0.0391552

CAGE analysis