Hb_008725_150

Information

Type -
Description -
Location Contig8725: 96654-99437
Sequence    

Annotation

kegg
ID rcu:RCOM_1348140
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002515321.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID Q38890
description Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1
trembl
ID B9RNI2
description Endoglucanase OS=Ricinus communis GN=RCOM_1348140 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_150 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_004316_070 0.1482665852 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
3 Hb_106321_030 0.1671202485 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_004137_060 0.1700360139 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
5 Hb_000832_130 0.173908819 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
6 Hb_004767_090 0.1757131557 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_002239_040 0.1760306938 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
8 Hb_189118_010 0.1764577677 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
9 Hb_000009_210 0.1788307238 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
10 Hb_000106_040 0.1816275603 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
11 Hb_000206_150 0.1819220877 - - unnamed protein product [Coffea canephora]
12 Hb_005738_010 0.1842288316 - - -
13 Hb_007101_180 0.1876371285 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
14 Hb_006816_170 0.1876467162 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
15 Hb_000200_140 0.1904939004 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]
16 Hb_001102_260 0.1920052079 - - hypothetical protein L484_019841 [Morus notabilis]
17 Hb_000398_190 0.1933995258 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
18 Hb_004567_100 0.1939043179 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
19 Hb_048476_170 0.1955090967 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
20 Hb_011861_070 0.1971927176 - - F-box/LRR-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008725_150 Hb_008725_150 Hb_004316_070 Hb_004316_070 Hb_008725_150--Hb_004316_070 Hb_106321_030 Hb_106321_030 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_004767_090 Hb_004767_090 Hb_008725_150--Hb_004767_090 Hb_002239_040 Hb_002239_040 Hb_008725_150--Hb_002239_040 Hb_004316_070--Hb_106321_030 Hb_000106_040 Hb_000106_040 Hb_004316_070--Hb_000106_040 Hb_002450_190 Hb_002450_190 Hb_004316_070--Hb_002450_190 Hb_000200_140 Hb_000200_140 Hb_004316_070--Hb_000200_140 Hb_001102_260 Hb_001102_260 Hb_004316_070--Hb_001102_260 Hb_002890_030 Hb_002890_030 Hb_106321_030--Hb_002890_030 Hb_003097_190 Hb_003097_190 Hb_106321_030--Hb_003097_190 Hb_010068_030 Hb_010068_030 Hb_106321_030--Hb_010068_030 Hb_000152_560 Hb_000152_560 Hb_106321_030--Hb_000152_560 Hb_029866_130 Hb_029866_130 Hb_106321_030--Hb_029866_130 Hb_029388_040 Hb_029388_040 Hb_106321_030--Hb_029388_040 Hb_010417_050 Hb_010417_050 Hb_004137_060--Hb_010417_050 Hb_000009_210 Hb_000009_210 Hb_004137_060--Hb_000009_210 Hb_014267_010 Hb_014267_010 Hb_004137_060--Hb_014267_010 Hb_000390_070 Hb_000390_070 Hb_004137_060--Hb_000390_070 Hb_000574_070 Hb_000574_070 Hb_004137_060--Hb_000574_070 Hb_000244_160 Hb_000244_160 Hb_004137_060--Hb_000244_160 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_004718_010 Hb_004718_010 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_064903_010 Hb_064903_010 Hb_000832_130--Hb_064903_010 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_111985_080 Hb_111985_080 Hb_000832_130--Hb_111985_080 Hb_000343_190 Hb_000343_190 Hb_004767_090--Hb_000343_190 Hb_004567_100 Hb_004567_100 Hb_004767_090--Hb_004567_100 Hb_000755_080 Hb_000755_080 Hb_004767_090--Hb_000755_080 Hb_005228_080 Hb_005228_080 Hb_004767_090--Hb_005228_080 Hb_017711_020 Hb_017711_020 Hb_004767_090--Hb_017711_020 Hb_005738_010 Hb_005738_010 Hb_004767_090--Hb_005738_010 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_003656_110 Hb_003656_110 Hb_002239_040--Hb_003656_110 Hb_002239_040--Hb_003097_190 Hb_002311_250 Hb_002311_250 Hb_002239_040--Hb_002311_250 Hb_006816_170 Hb_006816_170 Hb_002239_040--Hb_006816_170 Hb_002239_040--Hb_000152_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307469 1.07324 0.160197 0.237703 2.09611 1.76884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225921 0.474013 1.23259 0.865174 0.166464

CAGE analysis