Hb_008725_200

Information

Type -
Description -
Location Contig8725: 115005-115322
Sequence    

Annotation

kegg
ID rcu:RCOM_1348000
description hypothetical protein
nr
ID XP_012082854.1
description PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_200 0.0 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
2 Hb_002687_050 0.1137936381 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
3 Hb_134789_010 0.1320393559 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
4 Hb_033448_010 0.1336531505 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
5 Hb_000032_540 0.1401789885 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
6 Hb_049415_020 0.1403407187 - - -
7 Hb_000144_090 0.1463216035 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
8 Hb_000175_400 0.1474174751 - - conserved hypothetical protein [Ricinus communis]
9 Hb_074590_010 0.1509104052 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
10 Hb_002368_040 0.1526252446 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
11 Hb_011016_090 0.1547260195 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
12 Hb_000193_350 0.1551466128 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
13 Hb_011161_040 0.1560227966 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_004223_200 0.1566054882 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
15 Hb_004968_060 0.1579821505 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001310_070 0.159995263 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_000300_010 0.160033364 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000189_530 0.1610943305 - - 40S ribosomal protein S24B [Hevea brasiliensis]
19 Hb_004117_180 0.1611678756 - - -
20 Hb_017711_010 0.1623644721 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_200 Hb_008725_200 Hb_002687_050 Hb_002687_050 Hb_008725_200--Hb_002687_050 Hb_134789_010 Hb_134789_010 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_000032_540 Hb_000032_540 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_000144_090 Hb_000144_090 Hb_008725_200--Hb_000144_090 Hb_103873_010 Hb_103873_010 Hb_002687_050--Hb_103873_010 Hb_002687_050--Hb_134789_010 Hb_006602_010 Hb_006602_010 Hb_002687_050--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_002687_050--Hb_004735_010 Hb_006198_050 Hb_006198_050 Hb_002687_050--Hb_006198_050 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030 Hb_000563_530 Hb_000563_530 Hb_033448_010--Hb_000563_530 Hb_000369_090 Hb_000369_090 Hb_033448_010--Hb_000369_090 Hb_000184_120 Hb_000184_120 Hb_033448_010--Hb_000184_120 Hb_002200_120 Hb_002200_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_002259_030 Hb_002259_030 Hb_000032_540--Hb_002259_030 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_000032_540--Hb_000144_090 Hb_002078_050 Hb_002078_050 Hb_049415_020--Hb_002078_050 Hb_000330_170 Hb_000330_170 Hb_049415_020--Hb_000330_170 Hb_021888_130 Hb_021888_130 Hb_049415_020--Hb_021888_130 Hb_049415_020--Hb_033448_010 Hb_001999_060 Hb_001999_060 Hb_049415_020--Hb_001999_060 Hb_023226_010 Hb_023226_010 Hb_000144_090--Hb_023226_010 Hb_000144_090--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_000144_090--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000144_090--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_000144_090--Hb_007317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.2405 1.59573 5.8255 26.3282 57.6664 259.888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.72 168.821 111.803 19.0842 1.22172

CAGE analysis