Hb_008725_220

Information

Type -
Description -
Location Contig8725: 120965-121465
Sequence    

Annotation

kegg
ID rcu:RCOM_1347870
description hypothetical protein
nr
ID XP_012082856.1
description PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13999 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_O10.ab1: 120848-121533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_220 0.0 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
2 Hb_000959_240 0.0623657837 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_000025_490 0.0734931014 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
4 Hb_005054_330 0.0761044004 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
5 Hb_167186_010 0.0762086493 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_101437_010 0.0776814694 - - PREDICTED: protein P21-like [Jatropha curcas]
7 Hb_001515_040 0.0846241997 - - -
8 Hb_007858_020 0.0895425011 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_004032_220 0.0924238879 - - Calmodulin, putative [Ricinus communis]
10 Hb_003207_230 0.1132044503 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
11 Hb_179363_010 0.1167438438 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_020367_010 0.1185913274 - - hypothetical protein PRUPE_ppa004271mg [Prunus persica]
13 Hb_002119_030 0.118871475 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
14 Hb_112703_010 0.1212073134 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
15 Hb_124953_010 0.1271811453 - - hypothetical protein RCOM_1314600 [Ricinus communis]
16 Hb_000032_150 0.1291709899 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
17 Hb_000164_160 0.1305119524 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
18 Hb_000433_050 0.1318848653 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
19 Hb_001153_250 0.1338618541 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
20 Hb_047955_010 0.1341929582 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]

Gene co-expression network

sample Hb_008725_220 Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_008725_220--Hb_000959_240 Hb_000025_490 Hb_000025_490 Hb_008725_220--Hb_000025_490 Hb_005054_330 Hb_005054_330 Hb_008725_220--Hb_005054_330 Hb_167186_010 Hb_167186_010 Hb_008725_220--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_008725_220--Hb_101437_010 Hb_001515_040 Hb_001515_040 Hb_008725_220--Hb_001515_040 Hb_007858_020 Hb_007858_020 Hb_000959_240--Hb_007858_020 Hb_000959_240--Hb_005054_330 Hb_000959_240--Hb_167186_010 Hb_000959_240--Hb_101437_010 Hb_000959_240--Hb_000025_490 Hb_002119_030 Hb_002119_030 Hb_000025_490--Hb_002119_030 Hb_000025_490--Hb_001515_040 Hb_000025_490--Hb_167186_010 Hb_000025_490--Hb_101437_010 Hb_005054_330--Hb_007858_020 Hb_005054_330--Hb_167186_010 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_167186_010--Hb_007858_020 Hb_167186_010--Hb_002119_030 Hb_101437_010--Hb_001515_040 Hb_020367_010 Hb_020367_010 Hb_101437_010--Hb_020367_010 Hb_000433_050 Hb_000433_050 Hb_101437_010--Hb_000433_050 Hb_001515_040--Hb_020367_010 Hb_179363_010 Hb_179363_010 Hb_001515_040--Hb_179363_010 Hb_001515_040--Hb_000433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.448121 266.422 169.136 28.1158 0.280387 0.1026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.401321 0.840757 0.534344 0.305769 2.75182

CAGE analysis