Hb_008725_230

Information

Type -
Description -
Location Contig8725: 122238-130654
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11830g
description POPTRDRAFT_731738; hypothetical protein
nr
ID XP_012082857.1
description PREDICTED: CTP synthase [Jatropha curcas]
swissprot
ID Q54V77
description CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
trembl
ID B9I9L6
description CTP synthase OS=Populus trichocarpa GN=POPTR_0014s11830g PE=3 SV=2
Gene Ontology
ID GO:0003883
description ctp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61202: 123086-123401 , PASA_asmbl_61203: 126020-129259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_230 0.0 - - PREDICTED: CTP synthase [Jatropha curcas]
2 Hb_002232_410 0.0474970083 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
3 Hb_001359_050 0.0502660796 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001205_240 0.0562164823 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
5 Hb_004324_130 0.0573797896 - - polypyrimidine tract binding protein, putative [Ricinus communis]
6 Hb_000185_030 0.0605896936 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
7 Hb_000028_370 0.0608266865 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
8 Hb_001252_120 0.0611523568 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
9 Hb_000049_210 0.0635894575 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
10 Hb_024958_010 0.0638530921 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
11 Hb_000331_550 0.0642454178 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
12 Hb_006831_140 0.0651351977 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_002205_110 0.065625963 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000556_120 0.0668114517 - - Spastin, putative [Ricinus communis]
15 Hb_093458_040 0.0670217561 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
16 Hb_002078_350 0.0676655664 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_168978_010 0.0679106967 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
18 Hb_000460_030 0.0680606326 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
19 Hb_000028_180 0.0683423477 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
20 Hb_000030_030 0.068468333 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]

Gene co-expression network

sample Hb_008725_230 Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_002232_410--Hb_000028_370 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_001205_240--Hb_000028_370 Hb_003761_010 Hb_003761_010 Hb_001205_240--Hb_003761_010 Hb_001205_240--Hb_002205_110 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_000297_010 Hb_000297_010 Hb_000185_030--Hb_000297_010 Hb_000185_030--Hb_000710_060 Hb_000185_030--Hb_003761_010 Hb_001633_210 Hb_001633_210 Hb_000185_030--Hb_001633_210 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_000028_370--Hb_002205_110 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94566 4.76624 3.80292 4.61832 2.92827 3.93747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33144 5.04694 4.67416 5.3479 3.13297

CAGE analysis