Hb_008725_250

Information

Type -
Description -
Location Contig8725: 134477-137230
Sequence    

Annotation

kegg
ID rcu:RCOM_1347740
description phosphoribosylamine-glycine ligase, putative (EC:6.3.3.1)
nr
ID XP_012082861.1
description PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID P52424
description Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial OS=Vigna unguiculata GN=PUR5 PE=2 SV=1
trembl
ID A0A067JWB5
description Phosphoribosylformylglycinamidine cyclo-ligase OS=Jatropha curcas GN=JCGZ_14002 PE=3 SV=1
Gene Ontology
ID GO:0005739
description phosphoribosylformylglycinamidine cyclo- chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61206: 134452-137349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_250 0.0 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_005147_110 0.0518635888 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_004310_060 0.0617148043 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_005914_230 0.0627303782 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
5 Hb_002249_140 0.0693068947 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
6 Hb_000359_170 0.0704605521 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
7 Hb_012305_070 0.08256552 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001969_040 0.0858118376 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_005306_110 0.0871037585 - - casein kinase, putative [Ricinus communis]
10 Hb_002044_090 0.0875447351 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
11 Hb_000265_150 0.0876916877 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_030312_040 0.0884323291 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
13 Hb_033491_010 0.0888976728 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_000001_180 0.0890528458 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
15 Hb_000784_090 0.0891206901 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
16 Hb_004324_280 0.0893724472 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
17 Hb_000462_150 0.0894973666 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
18 Hb_003384_030 0.089965632 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
19 Hb_015941_030 0.0899990018 - - unknown [Populus trichocarpa]
20 Hb_000300_280 0.0902138161 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008725_250 Hb_008725_250 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_003384_030 Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_005914_230--Hb_018663_020 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090 Hb_022137_060 Hb_022137_060 Hb_000359_170--Hb_022137_060 Hb_002400_220 Hb_002400_220 Hb_000359_170--Hb_002400_220 Hb_005754_020 Hb_005754_020 Hb_000359_170--Hb_005754_020 Hb_033491_010 Hb_033491_010 Hb_000359_170--Hb_033491_010 Hb_005306_110 Hb_005306_110 Hb_000359_170--Hb_005306_110 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_012305_070--Hb_003384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.9322 37.6013 13.6182 15.131 76.8767 80.579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.1404 37.4871 44.4501 18.548 6.44953

CAGE analysis