Hb_008725_260

Information

Type -
Description -
Location Contig8725: 138118-141240
Sequence    

Annotation

kegg
ID rcu:RCOM_1347730
description hypothetical protein
nr
ID XP_012082862.1
description PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14003 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61207: 140317-140696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_260 0.0 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
2 Hb_002110_150 0.0470585542 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
3 Hb_002046_180 0.0533508229 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
4 Hb_000866_220 0.0546866598 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
5 Hb_009178_030 0.0559605017 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000876_070 0.0626047953 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_007532_030 0.0659122394 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
8 Hb_004907_110 0.0670783611 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
9 Hb_005779_060 0.0675724059 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
10 Hb_000003_250 0.0682150907 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
11 Hb_001157_040 0.069013635 - - casein kinase, putative [Ricinus communis]
12 Hb_012019_010 0.0694225899 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
13 Hb_000062_220 0.0706195924 - - BnaC02g35870D [Brassica napus]
14 Hb_010128_080 0.0722903191 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
15 Hb_031527_040 0.0743639816 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
16 Hb_000331_670 0.074576729 - - PREDICTED: protein tipD [Jatropha curcas]
17 Hb_000016_250 0.0748293139 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
18 Hb_000056_240 0.0763121512 - - PREDICTED: cullin-3A [Jatropha curcas]
19 Hb_085863_030 0.0764122965 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
20 Hb_001242_060 0.0769762549 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]

Gene co-expression network

sample Hb_008725_260 Hb_008725_260 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_000876_070 Hb_000876_070 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_002110_150--Hb_002046_180 Hb_005779_060 Hb_005779_060 Hb_002110_150--Hb_005779_060 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_005779_060 Hb_002046_180--Hb_000876_070 Hb_002046_180--Hb_005463_100 Hb_001157_040 Hb_001157_040 Hb_000866_220--Hb_001157_040 Hb_000056_240 Hb_000056_240 Hb_000866_220--Hb_000056_240 Hb_010128_080 Hb_010128_080 Hb_000866_220--Hb_010128_080 Hb_000866_220--Hb_002046_180 Hb_000189_560 Hb_000189_560 Hb_000866_220--Hb_000189_560 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_005779_060 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_007532_030--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37998 7.0378 4.3086 4.82931 5.23472 6.52038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.7761 9.36313 11.6793 4.19562 4.08409

CAGE analysis