Hb_008747_010

Information

Type -
Description -
Location Contig8747: 7032-11764
Sequence    

Annotation

kegg
ID cic:CICLE_v10014144mg
description hypothetical protein
nr
ID XP_012084882.1
description PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SHF3
description Protein argonaute 2 OS=Arabidopsis thaliana GN=AGO2 PE=1 SV=1
trembl
ID A0A067JWB9
description Protein argonaute OS=Jatropha curcas GN=JCGZ_22027 PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61224: 6998-9397 , PASA_asmbl_61226: 10188-10469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008747_010 0.0 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
2 Hb_012423_060 0.1404021929 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
3 Hb_000186_030 0.146693258 - - PREDICTED: uncharacterized protein LOC105649276 isoform X1 [Jatropha curcas]
4 Hb_000753_110 0.1540854542 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
5 Hb_003299_020 0.1572547444 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
6 Hb_005545_020 0.1635911628 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
7 Hb_005622_020 0.1649226563 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
8 Hb_001353_020 0.168379691 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000979_260 0.1728664506 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_002909_080 0.1748768029 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
11 Hb_021576_120 0.177763573 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
12 Hb_002641_120 0.1798039002 - - PREDICTED: calmodulin [Jatropha curcas]
13 Hb_002284_080 0.1835721093 - - protein with unknown function [Ricinus communis]
14 Hb_001377_530 0.1846241188 - - NC domain-containing family protein [Populus trichocarpa]
15 Hb_003050_360 0.1846852521 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
16 Hb_006634_100 0.1847608573 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002391_320 0.1850726671 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
18 Hb_000193_340 0.1874300112 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
19 Hb_004052_100 0.1884410252 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
20 Hb_112064_010 0.19174858 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_008747_010 Hb_008747_010 Hb_012423_060 Hb_012423_060 Hb_008747_010--Hb_012423_060 Hb_000186_030 Hb_000186_030 Hb_008747_010--Hb_000186_030 Hb_000753_110 Hb_000753_110 Hb_008747_010--Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_008747_010--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_008747_010--Hb_005545_020 Hb_005622_020 Hb_005622_020 Hb_008747_010--Hb_005622_020 Hb_002284_080 Hb_002284_080 Hb_012423_060--Hb_002284_080 Hb_001381_060 Hb_001381_060 Hb_012423_060--Hb_001381_060 Hb_011618_100 Hb_011618_100 Hb_012423_060--Hb_011618_100 Hb_002343_010 Hb_002343_010 Hb_012423_060--Hb_002343_010 Hb_012092_090 Hb_012092_090 Hb_012423_060--Hb_012092_090 Hb_000186_030--Hb_000753_110 Hb_002641_120 Hb_002641_120 Hb_000186_030--Hb_002641_120 Hb_000186_030--Hb_003299_020 Hb_000011_560 Hb_000011_560 Hb_000186_030--Hb_000011_560 Hb_000310_060 Hb_000310_060 Hb_000186_030--Hb_000310_060 Hb_000753_110--Hb_003299_020 Hb_000753_110--Hb_002641_120 Hb_000753_110--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_000753_110--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_000753_110--Hb_003398_040 Hb_003299_020--Hb_005545_020 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_003299_020--Hb_000009_420 Hb_003299_020--Hb_003398_040 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_000108_240 Hb_000108_240 Hb_005622_020--Hb_000108_240 Hb_004041_050 Hb_004041_050 Hb_005622_020--Hb_004041_050 Hb_006634_100 Hb_006634_100 Hb_005622_020--Hb_006634_100 Hb_003050_360 Hb_003050_360 Hb_005622_020--Hb_003050_360 Hb_002028_110 Hb_002028_110 Hb_005622_020--Hb_002028_110 Hb_000193_340 Hb_000193_340 Hb_005622_020--Hb_000193_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159965 4.38261 11.7697 9.64882 0.00560429 0.0212188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.570231 0.758576 4.76686 4.56655 6.52678

CAGE analysis