Hb_008748_040

Information

Type -
Description -
Location Contig8748: 27056-33821
Sequence    

Annotation

kegg
ID rcu:RCOM_1712710
description hydroxyacyl-ACP Dehydrase (EC:4.2.1.-)
nr
ID ADJ17723.1
description beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
swissprot
ID Q8DI01
description 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1
trembl
ID D9J166
description Beta-hydroxyacyl-acyl carrier protein dehydratase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005618
description hydroxyacyl-acp dehydrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61233: 27394-33672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008748_040 0.0 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
2 Hb_000025_470 0.0606695654 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_005357_080 0.0656988847 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
4 Hb_000212_330 0.0682363207 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_054865_120 0.0726083867 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
6 Hb_000054_090 0.0751619491 - - zinc finger protein, putative [Ricinus communis]
7 Hb_011671_040 0.0753772462 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
8 Hb_003226_140 0.0765056857 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
9 Hb_002728_070 0.0801408082 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
10 Hb_000599_300 0.0808103138 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
11 Hb_026198_070 0.0851180407 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
12 Hb_000019_030 0.0853910535 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
13 Hb_001157_020 0.0863544777 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
14 Hb_000676_250 0.0867610708 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
15 Hb_009545_080 0.0871734999 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
16 Hb_000230_560 0.0872578209 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_002303_070 0.0875571264 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
18 Hb_003688_130 0.0891750058 - - phosphoserine phosphatase, putative [Ricinus communis]
19 Hb_007672_060 0.0900979357 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
20 Hb_008511_130 0.0901231756 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]

Gene co-expression network

sample Hb_008748_040 Hb_008748_040 Hb_000025_470 Hb_000025_470 Hb_008748_040--Hb_000025_470 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_054865_120 Hb_054865_120 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_011671_040 Hb_011671_040 Hb_008748_040--Hb_011671_040 Hb_002728_070 Hb_002728_070 Hb_000025_470--Hb_002728_070 Hb_000025_470--Hb_054865_120 Hb_000025_470--Hb_011671_040 Hb_000058_100 Hb_000058_100 Hb_000025_470--Hb_000058_100 Hb_003688_130 Hb_003688_130 Hb_000025_470--Hb_003688_130 Hb_000019_030 Hb_000019_030 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_002303_070 Hb_002303_070 Hb_005357_080--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_003226_140 Hb_003226_140 Hb_005357_080--Hb_003226_140 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000094_300 Hb_000094_300 Hb_000212_330--Hb_000094_300 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_054865_120--Hb_002728_070 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_011671_040--Hb_003688_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4103 7.11141 15.9785 20.3504 20.6072 20.1414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4199 19.8152 16.8394 14.3098 13.9356

CAGE analysis