Hb_008748_050

Information

Type -
Description -
Location Contig8748: 34168-35409
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21740g
description POPTRDRAFT_709712; chlorophyll A-B binding family protein
nr
ID XP_011005195.1
description PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
swissprot
ID P27524
description Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1
trembl
ID A9PFP4
description Chlorophyll A-B binding family protein OS=Populus trichocarpa GN=POPTR_0001s21740g PE=2 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein cp24 chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61234: 34225-35389
cDNA
(Sanger)
(ID:Location)		 005_H17.ab1: 34470-35384 , 027_K17.ab1: 34474-35313 , 047_F08.ab1: 34552-35383

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008748_050 0.0 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
2 Hb_086022_020 0.0420324734 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
3 Hb_176135_010 0.0434799635 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_003090_050 0.0475275254 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
5 Hb_000111_460 0.0503963016 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
6 Hb_000923_030 0.0517660015 - - F-box family protein [Populus trichocarpa]
7 Hb_000012_370 0.0537768086 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002785_040 0.0577369217 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
9 Hb_005000_120 0.0583033135 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
10 Hb_000320_370 0.0600910623 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
11 Hb_000251_160 0.0611631053 - - chlorophyll A/B binding protein, putative [Ricinus communis]
12 Hb_000450_050 0.0612298654 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_001287_070 0.0617958212 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
14 Hb_001046_060 0.0623433845 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
15 Hb_001269_480 0.0642808586 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
16 Hb_004129_170 0.0652567849 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
17 Hb_005605_020 0.0655926848 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
18 Hb_001856_240 0.0660586746 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
19 Hb_107748_010 0.0684096271 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
20 Hb_002818_130 0.0687866039 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_008748_050 Hb_008748_050 Hb_086022_020 Hb_086022_020 Hb_008748_050--Hb_086022_020 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_003090_050 Hb_003090_050 Hb_008748_050--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_008748_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_000012_370 Hb_000012_370 Hb_008748_050--Hb_000012_370 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_004129_170 Hb_004129_170 Hb_086022_020--Hb_004129_170 Hb_002785_040 Hb_002785_040 Hb_086022_020--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_086022_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_086022_020--Hb_005375_090 Hb_176135_010--Hb_000012_370 Hb_176135_010--Hb_086022_020 Hb_003847_070 Hb_003847_070 Hb_176135_010--Hb_003847_070 Hb_176135_010--Hb_002785_040 Hb_176135_010--Hb_000251_160 Hb_000841_040 Hb_000841_040 Hb_003090_050--Hb_000841_040 Hb_003090_050--Hb_000111_460 Hb_003090_050--Hb_000923_030 Hb_001287_070 Hb_001287_070 Hb_003090_050--Hb_001287_070 Hb_000010_380 Hb_000010_380 Hb_003090_050--Hb_000010_380 Hb_000111_460--Hb_001287_070 Hb_000111_460--Hb_000841_040 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120 Hb_001104_080 Hb_001104_080 Hb_000923_030--Hb_001104_080 Hb_000825_010 Hb_000825_010 Hb_000923_030--Hb_000825_010 Hb_000923_030--Hb_001287_070 Hb_000805_080 Hb_000805_080 Hb_000923_030--Hb_000805_080 Hb_001191_060 Hb_001191_060 Hb_000012_370--Hb_001191_060 Hb_000012_370--Hb_086022_020 Hb_000185_010 Hb_000185_010 Hb_000012_370--Hb_000185_010 Hb_000320_370 Hb_000320_370 Hb_000012_370--Hb_000320_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360299 38.1714 893.591 288.293 0.170954 0.418796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.966774 0.967835 0.128146 8.41575 2255.33

CAGE analysis