Hb_008760_010

Information

Type -
Description -
Location Contig8760: 7346-8965
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46690g
description POPTRDRAFT_642620; hypothetical protein
nr
ID AEK87147.1
description berberine bridge enzyme [Hevea brasiliensis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID I6MGW2
description Berberine bridge enzyme OS=Hevea brasiliensis GN=BBE1 PE=2 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61263: 7417-9122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008760_010 0.0 - - berberine bridge enzyme [Hevea brasiliensis]
2 Hb_000130_110 0.1705993662 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
3 Hb_006153_080 0.1833681272 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
4 Hb_001195_360 0.187765401 - - PREDICTED: random slug protein 5 [Jatropha curcas]
5 Hb_000856_150 0.1897995479 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
6 Hb_000239_020 0.1958183503 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
7 Hb_002783_110 0.2063977291 - - Zeamatin precursor, putative [Ricinus communis]
8 Hb_000538_180 0.2088713335 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
9 Hb_006268_020 0.20898358 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
10 Hb_000059_010 0.2100232637 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_000215_080 0.2129590879 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
12 Hb_022250_020 0.214870239 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
13 Hb_005066_080 0.2149411671 - - hypothetical protein PRUPE_ppa025081mg [Prunus persica]
14 Hb_005542_060 0.2172947353 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002078_440 0.2177051666 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
16 Hb_011671_450 0.2197659817 - - -
17 Hb_005224_010 0.2222725058 - - glycine-rich protein [Bruguiera gymnorhiza]
18 Hb_005144_110 0.2230827546 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
19 Hb_003333_050 0.2232414831 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
20 Hb_004846_160 0.2244465622 - - -

Gene co-expression network

sample Hb_008760_010 Hb_008760_010 Hb_000130_110 Hb_000130_110 Hb_008760_010--Hb_000130_110 Hb_006153_080 Hb_006153_080 Hb_008760_010--Hb_006153_080 Hb_001195_360 Hb_001195_360 Hb_008760_010--Hb_001195_360 Hb_000856_150 Hb_000856_150 Hb_008760_010--Hb_000856_150 Hb_000239_020 Hb_000239_020 Hb_008760_010--Hb_000239_020 Hb_002783_110 Hb_002783_110 Hb_008760_010--Hb_002783_110 Hb_003994_190 Hb_003994_190 Hb_000130_110--Hb_003994_190 Hb_000130_110--Hb_001195_360 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_006153_080--Hb_000340_310 Hb_001277_090 Hb_001277_090 Hb_006153_080--Hb_001277_090 Hb_001096_110 Hb_001096_110 Hb_006153_080--Hb_001096_110 Hb_006153_080--Hb_000130_110 Hb_001195_360--Hb_003994_190 Hb_002043_050 Hb_002043_050 Hb_001195_360--Hb_002043_050 Hb_002205_130 Hb_002205_130 Hb_001195_360--Hb_002205_130 Hb_009005_050 Hb_009005_050 Hb_001195_360--Hb_009005_050 Hb_012799_100 Hb_012799_100 Hb_001195_360--Hb_012799_100 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000020_120 Hb_000020_120 Hb_000856_150--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000856_150--Hb_001511_070 Hb_000856_150--Hb_002205_130 Hb_000116_430 Hb_000116_430 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_000239_020--Hb_005542_060 Hb_029385_010 Hb_029385_010 Hb_002783_110--Hb_029385_010 Hb_026889_040 Hb_026889_040 Hb_002783_110--Hb_026889_040 Hb_000771_060 Hb_000771_060 Hb_002783_110--Hb_000771_060 Hb_002217_100 Hb_002217_100 Hb_002783_110--Hb_002217_100 Hb_130719_010 Hb_130719_010 Hb_002783_110--Hb_130719_010 Hb_028049_010 Hb_028049_010 Hb_002783_110--Hb_028049_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38701 3.81958 8.65629 7.01338 1.99613 1.3753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6888 8.43661 34.4187 13.6361 6.8456

CAGE analysis