Hb_008768_020

Information

Type -
Description -
Location Contig8768: 12697-14525
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13020g
description POPTRDRAFT_669774; hypothetical protein
nr
ID XP_012078807.1
description PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PFB3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13020g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61268: 12641-14508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008768_020 0.0 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
2 Hb_005701_110 0.1498307092 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
3 Hb_003147_070 0.1596690907 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
4 Hb_000529_280 0.1624156801 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_005181_160 0.164139287 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
6 Hb_000057_140 0.1687339159 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
7 Hb_000025_370 0.1690418335 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
8 Hb_009486_210 0.1710583952 - - -
9 Hb_000510_230 0.174475405 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
10 Hb_000984_260 0.1760181216 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
11 Hb_006210_020 0.1806283331 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
12 Hb_007741_130 0.1842589722 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
13 Hb_002960_090 0.1858649304 - - protein with unknown function [Ricinus communis]
14 Hb_000394_110 0.1861326062 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_001728_020 0.1867742097 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
16 Hb_015807_160 0.1879140606 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
17 Hb_012545_030 0.19026528 - - Polyadenylate-binding protein RBP47C [Glycine soja]
18 Hb_089140_110 0.1943944385 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_100790_010 0.1974935167 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005245_120 0.1998583152 - - XPA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008768_020 Hb_008768_020 Hb_005701_110 Hb_005701_110 Hb_008768_020--Hb_005701_110 Hb_003147_070 Hb_003147_070 Hb_008768_020--Hb_003147_070 Hb_000529_280 Hb_000529_280 Hb_008768_020--Hb_000529_280 Hb_005181_160 Hb_005181_160 Hb_008768_020--Hb_005181_160 Hb_000057_140 Hb_000057_140 Hb_008768_020--Hb_000057_140 Hb_000025_370 Hb_000025_370 Hb_008768_020--Hb_000025_370 Hb_012545_030 Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_003147_070--Hb_012545_030 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_000510_230 Hb_000510_230 Hb_003147_070--Hb_000510_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_001728_020 Hb_001728_020 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_172632_050 Hb_172632_050 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_005181_160--Hb_000025_370 Hb_001221_330 Hb_001221_330 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070 Hb_001199_040 Hb_001199_040 Hb_000057_140--Hb_001199_040 Hb_008226_080 Hb_008226_080 Hb_000057_140--Hb_008226_080 Hb_012340_060 Hb_012340_060 Hb_000057_140--Hb_012340_060 Hb_002701_010 Hb_002701_010 Hb_000057_140--Hb_002701_010 Hb_000057_140--Hb_005181_160 Hb_000057_140--Hb_004005_020 Hb_002028_090 Hb_002028_090 Hb_000025_370--Hb_002028_090 Hb_002671_090 Hb_002671_090 Hb_000025_370--Hb_002671_090 Hb_118282_010 Hb_118282_010 Hb_000025_370--Hb_118282_010 Hb_011053_010 Hb_011053_010 Hb_000025_370--Hb_011053_010 Hb_004984_030 Hb_004984_030 Hb_000025_370--Hb_004984_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6096 51.9677 107.931 48.4595 2.56308 4.08151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4639 77.162 26.9238 47.1481 9.63754

CAGE analysis