Hb_008770_030

Information

Type -
Description -
Location Contig8770: 34685-46579
Sequence    

Annotation

kegg
ID pop:POPTR_0019s01500g
description hypothetical protein
nr
ID XP_012081044.1
description PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
swissprot
ID Q9STW5
description MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1
trembl
ID A0A067K2E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18139 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61277: 34320-61668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008770_030 0.0 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
2 Hb_000710_060 0.0589605209 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
3 Hb_015807_150 0.0664432108 - - actin binding protein, putative [Ricinus communis]
4 Hb_000297_010 0.0669337129 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
5 Hb_033772_030 0.067437504 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
6 Hb_019863_070 0.0683696034 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
7 Hb_000185_030 0.0700190416 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
8 Hb_000049_210 0.079925703 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
9 Hb_002818_030 0.0807867643 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_001633_210 0.0809361886 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
11 Hb_000041_100 0.0812540496 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_001838_060 0.0823017037 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
13 Hb_003373_030 0.0839751587 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
14 Hb_000840_250 0.0840539177 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_000866_170 0.0842234307 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002450_020 0.0843214844 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
17 Hb_000614_250 0.084539718 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_022256_020 0.0865601873 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
19 Hb_015934_040 0.0874064741 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
20 Hb_002391_310 0.0875782875 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]

Gene co-expression network

sample Hb_008770_030 Hb_008770_030 Hb_000710_060 Hb_000710_060 Hb_008770_030--Hb_000710_060 Hb_015807_150 Hb_015807_150 Hb_008770_030--Hb_015807_150 Hb_000297_010 Hb_000297_010 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_000185_030 Hb_000185_030 Hb_008770_030--Hb_000185_030 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_015807_150--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_015807_150--Hb_002818_030 Hb_015934_040 Hb_015934_040 Hb_015807_150--Hb_015934_040 Hb_000032_520 Hb_000032_520 Hb_015807_150--Hb_000032_520 Hb_015807_150--Hb_000297_010 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_007163_120 Hb_007163_120 Hb_033772_030--Hb_007163_120 Hb_006922_010 Hb_006922_010 Hb_033772_030--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_033772_030--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_003464_090 Hb_003464_090 Hb_033772_030--Hb_003464_090 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000185_030--Hb_000840_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2087 25.7152 9.61661 16.1 10.5451 16.3367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0395 23.8601 22.3195 20.5474 12.9401

CAGE analysis