Hb_008771_030

Information

Type -
Description -
Location Contig8771: 47703-50154
Sequence    

Annotation

kegg
ID gmx:100305626
description uncharacterized LOC100305626
nr
ID XP_012082202.1
description PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
swissprot
ID Q55129
description Uncharacterized protein sll0400 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0400 PE=3 SV=1
trembl
ID A0A067JYQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16411 PE=4 SV=1
Gene Ontology
ID GO:0009507
description histidine phosphatase family (branch 1) protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61278: 47770-52214 , PASA_asmbl_61279: 47823-48287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008771_030 0.0 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
2 Hb_003787_010 0.0866219607 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
3 Hb_000111_330 0.091644398 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
4 Hb_000525_020 0.091811924 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000684_270 0.0929841872 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
6 Hb_002518_080 0.0967086029 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
7 Hb_000417_360 0.0971265542 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
8 Hb_034406_030 0.0991438546 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
9 Hb_001277_320 0.1003338747 - - Stem-specific protein TSJT1, putative [Ricinus communis]
10 Hb_000815_060 0.1005636314 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
11 Hb_000217_030 0.1006232324 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
12 Hb_000363_480 0.1009310681 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
13 Hb_022425_040 0.1017145862 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
14 Hb_003656_070 0.1024742943 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
15 Hb_015279_010 0.1059852908 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000167_140 0.1064392405 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
17 Hb_002995_020 0.1082117266 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_009051_030 0.1083108412 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
19 Hb_029904_030 0.1087061647 - - aspartate aminotransferase, putative [Ricinus communis]
20 Hb_029866_060 0.111016114 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]

Gene co-expression network

sample Hb_008771_030 Hb_008771_030 Hb_003787_010 Hb_003787_010 Hb_008771_030--Hb_003787_010 Hb_000111_330 Hb_000111_330 Hb_008771_030--Hb_000111_330 Hb_000525_020 Hb_000525_020 Hb_008771_030--Hb_000525_020 Hb_000684_270 Hb_000684_270 Hb_008771_030--Hb_000684_270 Hb_002518_080 Hb_002518_080 Hb_008771_030--Hb_002518_080 Hb_000417_360 Hb_000417_360 Hb_008771_030--Hb_000417_360 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_000111_330--Hb_029866_060 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_004871_020 Hb_004871_020 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000525_020--Hb_000684_270 Hb_000525_020--Hb_003787_010 Hb_002234_070 Hb_002234_070 Hb_000684_270--Hb_002234_070 Hb_077354_010 Hb_077354_010 Hb_000684_270--Hb_077354_010 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030 Hb_022425_040 Hb_022425_040 Hb_002518_080--Hb_022425_040 Hb_000127_180 Hb_000127_180 Hb_002518_080--Hb_000127_180 Hb_002518_080--Hb_000217_030 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000417_360--Hb_091433_020 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20292 3.92848 3.34055 3.00438 2.03959 3.89024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83847 12.1148 6.67725 5.30133 1.6584

CAGE analysis