Hb_008772_010

Information

Type -
Description -
Location Contig8772: 7282-13182
Sequence    

Annotation

kegg
ID rcu:RCOM_1315280
description hypothetical protein
nr
ID XP_002518974.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1315280 PE=4 SV=1
Gene Ontology
ID GO:0005739
description envelope glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61280: 7340-12538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008772_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006478_160 0.091096597 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
3 Hb_150196_010 0.0942697026 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_012760_070 0.0948432095 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000215_060 0.1015580082 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
6 Hb_000115_230 0.1027609223 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_000450_130 0.1029557243 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
8 Hb_000175_060 0.1033533864 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
9 Hb_005496_010 0.1055470778 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
10 Hb_011236_010 0.1066152038 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
11 Hb_011671_100 0.1081809429 - - 60S ribosomal protein L15 [Populus trichocarpa]
12 Hb_008921_020 0.1088196866 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_000417_360 0.1090323123 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
14 Hb_000788_010 0.1109261193 - - 40S ribosomal protein S16A [Hevea brasiliensis]
15 Hb_000731_190 0.1110003714 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
16 Hb_015807_100 0.1113623462 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_001718_030 0.112671609 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
18 Hb_091433_020 0.1128673911 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
19 Hb_000696_290 0.1134560925 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
20 Hb_001172_120 0.1137088657 - - hypothetical protein B456_012G082000 [Gossypium raimondii]

Gene co-expression network

sample Hb_008772_010 Hb_008772_010 Hb_006478_160 Hb_006478_160 Hb_008772_010--Hb_006478_160 Hb_150196_010 Hb_150196_010 Hb_008772_010--Hb_150196_010 Hb_012760_070 Hb_012760_070 Hb_008772_010--Hb_012760_070 Hb_000215_060 Hb_000215_060 Hb_008772_010--Hb_000215_060 Hb_000115_230 Hb_000115_230 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_005496_010 Hb_005496_010 Hb_150196_010--Hb_005496_010 Hb_001454_120 Hb_001454_120 Hb_150196_010--Hb_001454_120 Hb_004157_040 Hb_004157_040 Hb_150196_010--Hb_004157_040 Hb_000696_290 Hb_000696_290 Hb_150196_010--Hb_000696_290 Hb_150196_010--Hb_000115_230 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000748_130 Hb_000748_130 Hb_012760_070--Hb_000748_130 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000215_060--Hb_000175_060 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_011173_050 Hb_011173_050 Hb_000215_060--Hb_011173_050 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_015807_100 Hb_015807_100 Hb_000115_230--Hb_015807_100 Hb_001172_120 Hb_001172_120 Hb_000115_230--Hb_001172_120 Hb_007192_100 Hb_007192_100 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_000450_130--Hb_015807_100 Hb_000450_130--Hb_000363_480 Hb_000450_130--Hb_008921_020 Hb_000417_360 Hb_000417_360 Hb_000450_130--Hb_000417_360 Hb_000450_130--Hb_006478_160 Hb_004223_040 Hb_004223_040 Hb_000450_130--Hb_004223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22659 6.01994 4.8737 9.40526 4.85025 3.93683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25039 25.7372 13.4185 7.46343 3.31546

CAGE analysis