Hb_008775_040

Information

Type -
Description -
Location Contig8775: 39244-41115
Sequence    

Annotation

kegg
ID tcc:TCM_044270
description Pentatricopeptide repeat (PPR) superfamily protein, putative
nr
ID XP_007010452.1
description Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
swissprot
ID Q9LZ19
description Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
trembl
ID A0A061FRI7
description Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_044270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008775_040 0.0 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
2 Hb_000264_320 0.0382752894 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
3 Hb_000175_220 0.0611745566 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
4 Hb_002636_100 0.0701422064 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
5 Hb_003020_050 0.0790358039 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000140_230 0.0804686284 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
7 Hb_000330_040 0.0819500641 - - PREDICTED: protein RER1B-like [Jatropha curcas]
8 Hb_000322_150 0.0927534789 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
9 Hb_000441_070 0.0944421278 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
10 Hb_002043_140 0.0949803124 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_073562_010 0.0963105531 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
12 Hb_000928_300 0.0996719575 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
13 Hb_004767_050 0.0998630143 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
14 Hb_008500_010 0.1002261868 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
15 Hb_004228_020 0.1004287276 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
16 Hb_003467_020 0.1004462754 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
17 Hb_001828_130 0.1006071228 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
18 Hb_010172_090 0.100692331 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000392_150 0.1011989649 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
20 Hb_048219_010 0.1014283763 - - coronatine-insensitive 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_008775_040 Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_008775_040--Hb_000264_320 Hb_000175_220 Hb_000175_220 Hb_008775_040--Hb_000175_220 Hb_002636_100 Hb_002636_100 Hb_008775_040--Hb_002636_100 Hb_003020_050 Hb_003020_050 Hb_008775_040--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_008775_040--Hb_000140_230 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_000264_320--Hb_002636_100 Hb_000264_320--Hb_003020_050 Hb_000264_320--Hb_000140_230 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_004767_050 Hb_004767_050 Hb_000175_220--Hb_004767_050 Hb_000175_220--Hb_002636_100 Hb_001123_290 Hb_001123_290 Hb_000175_220--Hb_001123_290 Hb_001828_130 Hb_001828_130 Hb_000175_220--Hb_001828_130 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_003020_050--Hb_000140_230 Hb_073562_010 Hb_073562_010 Hb_003020_050--Hb_073562_010 Hb_001956_200 Hb_001956_200 Hb_003020_050--Hb_001956_200 Hb_168697_010 Hb_168697_010 Hb_003020_050--Hb_168697_010 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_000140_230--Hb_168697_010 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_001019_180 Hb_001019_180 Hb_000330_040--Hb_001019_180 Hb_000330_040--Hb_073562_010 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13449 2.12624 0.537735 0.424192 1.0968 1.15762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.485861 0.936586 1.51952 1.02727 0.645009

CAGE analysis