Hb_008785_040

Information

Type -
Description -
Location Contig8785: 41406-52673
Sequence    

Annotation

kegg
ID rcu:RCOM_0851780
description DNA-repair protein UVH3, putative
nr
ID XP_012081974.1
description PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
swissprot
ID Q9ATY5
description DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
trembl
ID B9RUC5
description DNA-repair protein UVH3, putative OS=Ricinus communis GN=RCOM_0851780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair protein uvh3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61324: 41410-46777 , PASA_asmbl_61327: 48198-48477 , PASA_asmbl_61328: 48581-49228 , PASA_asmbl_61329: 50085-51067 , PASA_asmbl_61330: 51769-52306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008785_040 0.0 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
2 Hb_002681_070 0.0615245872 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
3 Hb_005496_130 0.0727730454 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
4 Hb_006915_070 0.0771239116 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
5 Hb_002154_100 0.080287335 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
6 Hb_004100_080 0.0806134961 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000856_110 0.0827388855 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
8 Hb_007632_030 0.0851085731 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
9 Hb_000345_170 0.0861086255 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
10 Hb_035755_010 0.0874083327 - - unknown [Populus trichocarpa]
11 Hb_006502_090 0.0881590252 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
12 Hb_000120_790 0.0882599863 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
13 Hb_000373_280 0.0896651834 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
14 Hb_001019_190 0.0907684606 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023386_020 0.0911668673 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
16 Hb_002893_070 0.0926053392 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
17 Hb_008554_030 0.0929125792 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
18 Hb_001545_120 0.0941820039 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
19 Hb_001776_140 0.0942524045 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_002527_030 0.0943174563 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008785_040 Hb_008785_040 Hb_002681_070 Hb_002681_070 Hb_008785_040--Hb_002681_070 Hb_005496_130 Hb_005496_130 Hb_008785_040--Hb_005496_130 Hb_006915_070 Hb_006915_070 Hb_008785_040--Hb_006915_070 Hb_002154_100 Hb_002154_100 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_000856_110 Hb_000856_110 Hb_008785_040--Hb_000856_110 Hb_002681_070--Hb_006915_070 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_002681_070--Hb_005496_130 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_009767_110 Hb_009767_110 Hb_005496_130--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_006915_070--Hb_000034_040 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_006915_070--Hb_000856_110 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010 Hb_023386_020 Hb_023386_020 Hb_004100_080--Hb_023386_020 Hb_004100_080--Hb_000856_110 Hb_000160_210 Hb_000160_210 Hb_004100_080--Hb_000160_210 Hb_004841_010 Hb_004841_010 Hb_004100_080--Hb_004841_010 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004412_010 Hb_004412_010 Hb_004100_080--Hb_004412_010 Hb_000856_110--Hb_023386_020 Hb_000856_110--Hb_004841_010 Hb_000856_110--Hb_004412_010 Hb_000856_110--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4448 6.59045 5.68254 5.15519 16.3008 13.2644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7615 14.5988 8.51276 7.95958 14.2518

CAGE analysis