Hb_008790_040

Information

Type -
Description -
Location Contig8790: 93061-97355
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24260g
description POPTRDRAFT_819477; lysine decarboxylase family protein
nr
ID XP_012077253.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
swissprot
ID Q84MC2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1
trembl
ID A0A067KD63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07648 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61371: 94590-97259 , PASA_asmbl_61372: 93001-94804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008790_040 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
2 Hb_158092_040 0.1565979113 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
3 Hb_001310_050 0.1656696251 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
4 Hb_008066_080 0.1704650451 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
5 Hb_006889_030 0.1746438904 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
6 Hb_006153_180 0.1750844853 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
7 Hb_002301_110 0.1779872178 - - PREDICTED: protein E6-like [Populus euphratica]
8 Hb_006615_230 0.1804906174 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_000165_200 0.1819583567 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_001459_090 0.1819852591 - - unnamed protein product [Vitis vinifera]
11 Hb_080477_080 0.1826032008 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
12 Hb_000959_130 0.1876316935 - - organic anion transporter, putative [Ricinus communis]
13 Hb_001119_070 0.1891168676 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
14 Hb_134014_010 0.1911821361 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
15 Hb_000028_490 0.194091505 - - calmodulin-like protein 6a [Populus trichocarpa]
16 Hb_002928_020 0.1948093267 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
17 Hb_005333_080 0.1986089133 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005784_060 0.199634041 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
19 Hb_012395_050 0.2035998605 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_189003_070 0.2044462788 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]

Gene co-expression network

sample Hb_008790_040 Hb_008790_040 Hb_158092_040 Hb_158092_040 Hb_008790_040--Hb_158092_040 Hb_001310_050 Hb_001310_050 Hb_008790_040--Hb_001310_050 Hb_008066_080 Hb_008066_080 Hb_008790_040--Hb_008066_080 Hb_006889_030 Hb_006889_030 Hb_008790_040--Hb_006889_030 Hb_006153_180 Hb_006153_180 Hb_008790_040--Hb_006153_180 Hb_002301_110 Hb_002301_110 Hb_008790_040--Hb_002301_110 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_000313_230 Hb_000313_230 Hb_001310_050--Hb_000313_230 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_003783_050 Hb_003783_050 Hb_001310_050--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_001310_050--Hb_030312_030 Hb_036388_010 Hb_036388_010 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010 Hb_001189_100 Hb_001189_100 Hb_008066_080--Hb_001189_100 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_000692_110 Hb_000692_110 Hb_008066_080--Hb_000692_110 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_000098_170 Hb_000098_170 Hb_006889_030--Hb_000098_170 Hb_000049_270 Hb_000049_270 Hb_006889_030--Hb_000049_270 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_031284_030 Hb_031284_030 Hb_006889_030--Hb_031284_030 Hb_003878_220 Hb_003878_220 Hb_006153_180--Hb_003878_220 Hb_000975_200 Hb_000975_200 Hb_006153_180--Hb_000975_200 Hb_011861_090 Hb_011861_090 Hb_006153_180--Hb_011861_090 Hb_000069_150 Hb_000069_150 Hb_006153_180--Hb_000069_150 Hb_002909_110 Hb_002909_110 Hb_006153_180--Hb_002909_110 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_001472_110 Hb_001472_110 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002072_040 Hb_002072_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002339_030 Hb_002339_030 Hb_002301_110--Hb_002339_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140638 1.56248 3.4063 10.2374 0.374179 0.235116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104071 0.0272903 2.65639 5.25748 4.15106

CAGE analysis