Hb_008790_050

Information

Type -
Description -
Location Contig8790: 100620-101318
Sequence    

Annotation

kegg
ID rcu:RCOM_0706010
description hypothetical protein
nr
ID XP_002516088.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0706010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008790_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003786_090 0.1716950799 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
3 Hb_002240_040 0.2042516713 - - -
4 Hb_039229_010 0.2063413424 - - -
5 Hb_005531_010 0.2105538053 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
6 Hb_033835_020 0.2127955384 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_008505_020 0.2131354641 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001741_130 0.2200333494 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
9 Hb_163268_010 0.2200990243 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
10 Hb_001587_210 0.2234572903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
11 Hb_100873_030 0.2239147444 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
12 Hb_000756_020 0.2373526412 - - BnaA05g19440D [Brassica napus]
13 Hb_000995_070 0.2386311004 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_042223_010 0.242310336 - - Protein Z, putative [Ricinus communis]
15 Hb_156473_010 0.2476664058 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
16 Hb_168925_010 0.2522447778 - - -
17 Hb_018954_010 0.2543732274 - - -
18 Hb_000784_040 0.2583766361 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
19 Hb_091433_040 0.2719417154 - - PREDICTED: josephin-like protein [Jatropha curcas]
20 Hb_000172_570 0.2720769846 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008790_050 Hb_008790_050 Hb_003786_090 Hb_003786_090 Hb_008790_050--Hb_003786_090 Hb_002240_040 Hb_002240_040 Hb_008790_050--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_008790_050--Hb_039229_010 Hb_005531_010 Hb_005531_010 Hb_008790_050--Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_008790_050--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_008790_050--Hb_008505_020 Hb_000784_040 Hb_000784_040 Hb_003786_090--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_003786_090--Hb_001587_210 Hb_000450_020 Hb_000450_020 Hb_003786_090--Hb_000450_020 Hb_001741_130 Hb_001741_130 Hb_003786_090--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_003786_090--Hb_163268_010 Hb_002240_040--Hb_005531_010 Hb_002240_040--Hb_033835_020 Hb_002240_040--Hb_008505_020 Hb_002240_040--Hb_001741_130 Hb_002240_040--Hb_163268_010 Hb_002240_040--Hb_039229_010 Hb_168925_010 Hb_168925_010 Hb_039229_010--Hb_168925_010 Hb_039229_010--Hb_005531_010 Hb_039229_010--Hb_033835_020 Hb_039229_010--Hb_008505_020 Hb_039229_010--Hb_001741_130 Hb_005531_010--Hb_033835_020 Hb_005531_010--Hb_008505_020 Hb_005531_010--Hb_001741_130 Hb_005531_010--Hb_163268_010 Hb_000756_020 Hb_000756_020 Hb_005531_010--Hb_000756_020 Hb_033835_020--Hb_008505_020 Hb_033835_020--Hb_001741_130 Hb_033835_020--Hb_163268_010 Hb_033835_020--Hb_000756_020 Hb_008505_020--Hb_001741_130 Hb_008505_020--Hb_163268_010 Hb_008505_020--Hb_000756_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.031312 0 0.0460528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0810662 0.573563 1.59175 0.0259314 0

CAGE analysis