Hb_008810_030

Information

Type -
Description -
Location Contig8810: 15991-18048
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_012066188.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at5g39020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008810_030 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
2 Hb_004393_030 0.0587286215 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
3 Hb_021254_020 0.0771022369 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_134022_010 0.0825921327 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_004899_360 0.0902820929 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_000032_090 0.0974170781 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004109_240 0.0993012199 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
8 Hb_001660_130 0.1051771868 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
9 Hb_000402_180 0.1066543144 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
10 Hb_000985_140 0.1101374045 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
11 Hb_000836_420 0.1140715675 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_007007_030 0.1149153508 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007102_010 0.1153014839 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
14 Hb_028486_010 0.1162709469 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
15 Hb_004112_050 0.1185101288 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_008202_020 0.1196781558 - - receptor serine/threonine kinase, putative [Ricinus communis]
17 Hb_012799_040 0.1220374559 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
18 Hb_003078_070 0.1242695302 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
19 Hb_004837_110 0.1242946222 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
20 Hb_000087_200 0.1251151013 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]

Gene co-expression network

sample Hb_008810_030 Hb_008810_030 Hb_004393_030 Hb_004393_030 Hb_008810_030--Hb_004393_030 Hb_021254_020 Hb_021254_020 Hb_008810_030--Hb_021254_020 Hb_134022_010 Hb_134022_010 Hb_008810_030--Hb_134022_010 Hb_004899_360 Hb_004899_360 Hb_008810_030--Hb_004899_360 Hb_000032_090 Hb_000032_090 Hb_008810_030--Hb_000032_090 Hb_004109_240 Hb_004109_240 Hb_008810_030--Hb_004109_240 Hb_004393_030--Hb_021254_020 Hb_004393_030--Hb_000032_090 Hb_000985_140 Hb_000985_140 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_021254_020--Hb_004109_240 Hb_003078_070 Hb_003078_070 Hb_021254_020--Hb_003078_070 Hb_021254_020--Hb_000985_140 Hb_021254_020--Hb_001660_130 Hb_004724_300 Hb_004724_300 Hb_134022_010--Hb_004724_300 Hb_000402_180 Hb_000402_180 Hb_134022_010--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_134022_010--Hb_036492_020 Hb_001821_050 Hb_001821_050 Hb_134022_010--Hb_001821_050 Hb_134022_010--Hb_004393_030 Hb_008202_020 Hb_008202_020 Hb_004899_360--Hb_008202_020 Hb_004899_360--Hb_004109_240 Hb_097007_020 Hb_097007_020 Hb_004899_360--Hb_097007_020 Hb_001619_140 Hb_001619_140 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020 Hb_001254_020 Hb_001254_020 Hb_000032_090--Hb_001254_020 Hb_002374_030 Hb_002374_030 Hb_000032_090--Hb_002374_030 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_000087_200 Hb_000087_200 Hb_004109_240--Hb_000087_200 Hb_028486_010 Hb_028486_010 Hb_004109_240--Hb_028486_010 Hb_004109_240--Hb_008202_020 Hb_121540_010 Hb_121540_010 Hb_004109_240--Hb_121540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.474094 0.344098 0.189307 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0389436 0.134002

CAGE analysis